DreINT0054295 @ danRer10
Intron Retention
Gene
ENSDARG00000018485 | cyp2v1
Description
cytochrome P450, family 2, subfamily V, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040912-139]
Coordinates
chr20:25655813-25657273:+
Coord C1 exon
chr20:25655813-25655962
Coord A exon
chr20:25655963-25657112
Coord C2 exon
chr20:25657113-25657273
Length
1150 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
TGTTTTTCTATTTTTACCAGGGC
3' ss Score
9.27
Exon sequences
Seq C1 exon
GTCTAACCTTTAATAATGGCTACAGCTGGAAGCAACATAGGCGTTTTACTCTAAGTACTCTTAAATTCTTTGGTGTGGGAAAGAGAAGCCTGGAATTCATCATCATGGAGGAGTACAAATTCTTGCACCAGTCCATCATGGATACCAATG
Seq A exon
GTAAAGTACTACAGTGAGATGATAGAAATCATAATAGGTGGAGTGATAATAAGAGTTGTAACCTGGCTAATTGTTTAGCTTTACTTTGTATTTAAATATATGTTGTCAAATTATATATTATAAATATATAATAAATAAATGTTGTTTGCATAATATTTTATGACAAGAGACATCATATATTTTATGATTTACAAGGAACTTCTAAACACTGTCGCCGCTATTGTTACACACCACTTTGAGTGTTACACAGGCTTGCCGGTGCATGTTTTCCAGGTTTTTGCTATACAAACACAAACAATTGTGTATATGATTGAAATGCCCAGATGGTCTTGAAAAAATAGTCATACTTAGGTTCTTTGTGGTTAAAAATTAGTGCCATTGATTAGCATTAGTGATCTTTGATGATGTTTAAATATAAAGTGTATCCATATAAGCAATAAATAATGTTTGTAAGATTTATACACATATAAGTAATACTATTTATAAACTAGGTAATACACAGCTTTATTTATTCCACCAAAAGAACTCACACTTCAACTTCCATCCATGAACTGGATTTTAAGTACACTTTTAAATAATTTCTGTGTTATTTAATAAAAACAAATAAATGGTGAAAAAACACTTCTTTTCAGTCTATTTGGACAAAGAAATGGAGGAAAAACTAGTGGAAATTTGACAGGAGCCTGTTTGATGTGTCATCTGAGCAATACCACAACCGGGTCCAAAAAGAAAAAAAGTGAAGGAGAAATTATTCCTTTGAAAAGTCAGATGTGCATAATAAGTACATTTTCTACCCCACTAAAGGCTTCTTCCCCATCCCAGATTTATCTTGCAGTGTAAACACAGCAGTGACTAAATGCTACCCCAGATAGTCATACAGTGTGAAAACATCTGTGATGCGACTACCTTGAAAATCATGCAGTCTGAACTCAACATAAGTTAGAAATAGCTGATAAATAAGGACACAAGCCATGTGTAGGAAGCAGAATATCATTGATTTGCATTCATTTGACATGGGCTAGCAAGCAACTTTTTAGAAAGCGAGTAAGCAATAAGCTCAGAACGCTTTAGCAACACTTTTGACAAGTACCCCTAACATAATCTAGTTCGACACCGAAACCAGTTTAACCTGTTTTTCTATTTTTACCAG
Seq C2 exon
GGCTGCCATTCAACCCTCATTACATCATTAACAATGGCGTCTCCAACATCATCTGCTCTATGGTGTTTGGAAGAAGGTTTGAATACACTGACCAGAGGTTTCTGAACATGCTCAGTCTGATTTCTAAAGCCCTTAAACTACAAACGTCTGTGTTTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018485:ENSDART00000102913:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAACCTTTAATAATGGCTACAGC
R:
TGTATAAACACAGACGTTTGTAGTTT
Band lengths:
310-1460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]