MmuINT0044959 @ mm9
Intron Retention
Gene
ENSMUSG00000057138 | Cyp2d12
Description
cytochrome P450, family 2, subfamily d, polypeptide 12 [Source:MGI Symbol;Acc:MGI:88604]
Coordinates
chr15:82387306-82388264:+
Coord C1 exon
chr15:82387306-82387466
Coord A exon
chr15:82387467-82388087
Coord C2 exon
chr15:82388088-82388264
Length
621 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TTCCCCCGTGTCTCTCACAGGTT
3' ss Score
12.21
Exon sequences
Seq C1 exon
GGCAGTACATCAATCCCAACACCATGCTGAAAAAAGCTACGTGCAATGTGATTGCATCTCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCTGAAAGTACTGGAAGATAGTTTGACAGAACTCTCTGGATTAATTCCTGAG
Seq A exon
GTAGGAGGTTCAGGGCAGCCTACAGAACCACTTTTGTGCAGTCTGTCTTCCCTGTGCCAAGTTTGTGGGAGAGGCCTTCTTGGGTTCAACTACAGAAGGATATGCCTGTTGACAACTATTTGAGAACATGAGGGGAGAAGTGGACTAAGATCAGGATTTCCACAAAGGGAGAGAACTTGGGCCTTCTATTTGCATGGAACACCAAAAGTCTGTGTTTATGGCCAGGGTAGAATATTCCTCTGTTCACCTGGTGCTGAGAGAACCTTTAGGTGGCTCTTCAAATTTAACAGTTGTATAGGAAGCTGGGGACAGGTGGGAACAAACAGGCTTTGTGTCTGTTGTGAGGGAGGCTGGCAACTGAGACTGGTCCAGGTGGATACCGAGCATCACTAGCACGGAGCAGACAGTAAAATGGTGAGTGGGTAAGGAGCTGGCAAAGCAAGGCAGCTGACCCCAGTTTGATGTCTGGGACCCATGTGGAACAGAGACAATTGACTCTACACACTGTCCTATCACTTGCTTCCATACACTCTGCCCTATAAGCACCATACATGATTATGATTCACTAATAATTAATTTTATGAAGATGAACCTCTGAGACTTCCCCCGTGTCTCTCACAG
Seq C2 exon
GTTATTAACACATTCCCGATACTCCTGCACATCCCAAGGCTGGCTGACAAGTTCCTGCAAAGTCAGAAGTCCTTCATCGCCATAGTGGATAACCTGTTGACTGAAAACAGGACCACTTGGGACCCTGCCCAGTCACCCCGAAATTTGACTGATGCCTTCCTGGCAGAGATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057138-Cyp2d12:NM_201360:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(0.1=0.0),PF0006717=p450=FE(16.0=100)
A:
NA
C2:
PF0006717=p450=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTACATCAATCCCAACACCA
R:
TCTCTATCTCTGCCAGGAAGG
Band lengths:
335-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: