MmuINT0044959 @ mm10
Intron Retention
Gene
ENSMUSG00000096852 | Cyp2d12
Description
cytochrome P450, family 2, subfamily d, polypeptide 12 [Source:MGI Symbol;Acc:MGI:88604]
Coordinates
chr15:82556876-82557834:+
Coord C1 exon
chr15:82556876-82557036
Coord A exon
chr15:82557037-82557657
Coord C2 exon
chr15:82557658-82557834
Length
621 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TTCCCCCGTGTCTCTCACAGGTT
3' ss Score
12.21
Exon sequences
Seq C1 exon
GGCAGTACATCAATCCCAACACCATGCTGAAAAAAGCTACGTGCAATGTGATTGCATCTCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCTGAAAGTACTGGAAGATAGTTTGACAGAACTCTCTGGATTAATTCCTGAG
Seq A exon
GTAGGAGGTTCAGGGCAGCCTACAGAACCACTTTTGTGCAGTCTGTCTTCCCTGTGCCAAGTTTGTGGGAGAGGCCTTCTTGGGTTCAACTACAGAAGGATATGCCTGTTGACAACTATTTGAGAACATGAGGGGAGAAGTGGACTAAGATCAGGATTTCCACAAAGGGAGAGAACTTGGGCCTTCTATTTGCATGGAACACCAAAAGTCTGTGTTTATGGCCAGGGTAGAATATTCCTCTGTTCACCTGGTGCTGAGAGAACCTTTAGGTGGCTCTTCAAATTTAACAGTTGTATAGGAAGCTGGGGACAGGTGGGAACAAACAGGCTTTGTGTCTGTTGTGAGGGAGGCTGGCAACTGAGACTGGTCCAGGTGGATACCGAGCATCACTAGCACGGAGCAGACAGTAAAATGGTGAGTGGGTAAGGAGCTGGCAAAGCAAGGCAGCTGACCCCAGTTTGATGTCTGGGACCCATGTGGAACAGAGACAATTGACTCTACACACTGTCCTATCACTTGCTTCCATACACTCTGCCCTATAAGCACCATACATGATTATGATTCACTAATAATTAATTTTATGAAGATGAACCTCTGAGACTTCCCCCGTGTCTCTCACAG
Seq C2 exon
GTTATTAACACATTCCCGATACTCCTGCACATCCCAAGGCTGGCTGACAAGTTCCTGCAAAGTCAGAAGTCCTTCATCGCCATAGTGGATAACCTGTTGACTGAAAACAGGACCACTTGGGACCCTGCCCAGTCACCCCGAAATTTGACTGATGCCTTCCTGGCAGAGATAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096852:ENSMUST00000068861:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
NA
C2:
PF0006717=p450=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTACATCAATCCCAACACCA
R:
TCTCTATCTCTGCCAGGAAGG
Band lengths:
335-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types