RnoINT0044357 @ rn6
Intron Retention
Gene
ENSRNOG00000029128 | Cyp2d5
Description
cytochrome P450, family 2, subfamily d, polypeptide 5 [Source:RGD Symbol;Acc:628630]
Coordinates
chr7:123618182-123619133:-
Coord C1 exon
chr7:123618973-123619133
Coord A exon
chr7:123618359-123618972
Coord C2 exon
chr7:123618182-123618358
Length
614 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TCCCTCTGTGTCTCTCACAGGTT
3' ss Score
12.78
Exon sequences
Seq C1 exon
GGCGGTCCATCAATCCCAAGGCCATGCTGAACAAAGCCTTGTGTAATGTGATCGCATCCCTCATTTTTGCCCGTCGCTTTGAATATGAAGACCCTTACCTCATCAGGATGCTGACACTAGTGGAAGAAAGTTTGATAGAAGTCTCTGGTTTCATTCCTGAG
Seq A exon
GTGAGAGGTTCAGGGCAGCCTACAGAGCCACTTGTGTGCGGTCCTTCTTCGCTGGGGGAAGCTGTGTGCCAAGGCTGTGGGAGAGGTCAACTGCAGGAGGACTGGCCTGTTGACAACTGTTGGATGACAGGAGTGGAGAAGTGAATCAAGATCAGGATTTCCAGACAGGGAGAGACATGGGCCCTCTTTGTGCCTGAGAGACGGAAAGTCAGCGCTTGTCCCTGGGGTAGAATAGTCCTTCTATTCAGCTGGGGCTGTGAGAGCCTGTAGGTGGAGCTTGCAAATTTAACAGTTGAGGAGGAGGCAGGTGATGGGTGGGAACAACCAGGCTCTGGGAAGGAGGCTGGCACCTGAGCCTGGTCCAGGTGAGTACCCAGCATCCCTAGCACCGAGGGGCCAACCAAATGGTGAGTGGGGAAGGATCCGGGCAAGCAAGCCTGCCACCTGAGTTTGATGTCTGGGACTCATGTAGGATAGAGACAATGGACTCTACACATTGTCCCATCACTTGTTCCCACACACCGCGGCACAGGAGCCCCATACACGATCATGATTCACTAATAACTGATTTTGTGAAGAGGAAGCTCTGAGACTTCCCTCTGTGTCTCTCACAG
Seq C2 exon
GTTCTTAACACGTTCCCAGCACTGCTGCGCATCCCAGGGCTGGCTGACAAGGTCTTCCAAGGTCAGAAGACCTTCATGGCCTTCCTGGATAACCTGCTGGCTGAGAACAGGACCACCTGGGACCCTGCCCAGCCACCCCGAAATCTGACTGATGCCTTCCTGGCTGAGGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029128:ENSRNOT00000046024:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
NA
C2:
PF0006717=p450=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGTCCATCAATCCCAAG
R:
AGGCATCAGTCAGATTTCGGG
Band lengths:
318-932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]