Special

MmuINT0044967 @ mm9

Intron Retention

Gene
NA
Description
NA
Coordinates
chr15:82469695-82470696:-
Coord C1 exon
chr15:82470536-82470696
Coord A exon
chr15:82469872-82470535
Coord C2 exon
chr15:82469695-82469871
Length
664 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
ATATTCTATGGTTGTTACAGGTT
3' ss Score
7.34
Exon sequences
Seq C1 exon
GGAGTCCCCTCGATCCTTACACACTCCTGAACAAAGCTGTGTGCAATGTGATTGCGTCTCTCATTTATGCCCGTCGCTTTGAGTATGGAGACCCTGACTTCATCAAGATGCTAAAAATATTGAAAGAAAACATGGGAGAGAATACTGGCTTGTTTCCAGAG
Seq A exon
GTAGGAGACTCAAGGGCAGCCTTCAGATCAACTTCCCTGCTTTCCATCTTCCAAGAGGAGGCTGTAGACAGGAGATTTGGAAAGGAGACCTCTAGAAGTGTCATCCACAGGAATAGGAGCCTGAAGCTTGACAAGCATGCAGCAATGTGAGGGGAGAAGAGGCCCAAGATTAGGCCCTCTAGAATGTGAGAAGCTGGGCCTCTGCTCACAGGGAAGCCACCAAAGCCTATGGGATTTCCACCAAGGTGCTGCTAGAGGCTGAAGGCATGGACTAAGAAGGAGTCAGGTGATGGGTGGGAACACATAGGGCCCGTGTCCATCATGGAAGAGGCTGGTAACTAAGACTGGCCGAGATCAACACTAAGCCTATGTACCCAGGAGCCAGAGAGATGGTTAGTGGGTAAGGAGCTTGCCAGGCAAGCAGGGTGCTTGAGTTTCAATCCTGGATGCCACGCAACTGACTCTCTATGGTTTTCCTGGACCTCAACATCTTTGTTGTGTCAATAGCACTGCTCACATCATTTGCACATGGAAACACATTGAAATAATGACTATTATTACTGAAGTTATTTCTTACTTATTATTGTTATTTTAACTAATTATTTACTCAACTCGTTAAATTAAAGGCAGCAGGAAAACTTACCATATTCTATGGTTGTTACAG
Seq C2 exon
GTTCTGAACACATTTCCAATTCTCCTGCACATCCCAGGGTTGGCTGACAAAGTCTTCCCTGGGCAAAAGACATTTCTCACCCTGGTAAATAAGCTGGTGACTGAGCACAAGAGGACCTGGGACCCTGACCAGCCACCTCGTGACCTGACTGATGCCTTTCTGGCTGAAATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp2d13:NR_003552:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
NA





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr22:42538055-42538479 
HsaINT0044289
(CYP2D7P1)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:113623345-113623725 
Chicken
(galGal4)
chr1:49268963-49269089 
LOW PSI
GgaINT0117950
(CYP2D6)
Chicken
(galGal3)
chr1:51295979-51296105 
LOW PSI
GgaINT0117950
(F1NJG4_CHICK)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGAGTCCCCTCGATCCTTACA

				
R: 
AAAGGCATCAGTCAGGTCACG

				
Band lengths: 
320-984

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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