MmuINT0044975 @ mm9
Intron Retention
Gene
ENSMUSG00000061740 | Cyp2d22
Description
cytochrome P450, family 2, subfamily d, polypeptide 22 [Source:MGI Symbol;Acc:MGI:1929474]
Coordinates
chr15:82204103-82204486:-
Coord C1 exon
chr15:82204334-82204486
Coord A exon
chr15:82204264-82204333
Coord C2 exon
chr15:82204103-82204263
Length
70 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
ACTGACATTTCTACTCCCAGGAC
3' ss Score
7.84
Exon sequences
Seq C1 exon
GTATAGTCCTAGCACGGTATGGGCCTGCCTGGCGTCAGCAGCGGCGCTTCTCTGTGTCTACCATGCACCACTTTGGCCTGGGCAAGAAGTCACTGGAGCAGTGGGTGACTGAGGAGGCCAGATGCCTCTGTGCCGCCTTCGCTGACCATACTG
Seq A exon
GTAGGTGGTGGATTGGTGTGGGTAGGTGGGGATAAACAGACAACACCCTGACTGACATTTCTACTCCCAG
Seq C2 exon
GACACCCTTTCAGCCCTAACACCCTATTGGACAAAGCAGTGTGTAACGTGATCGCGTCCCTCCTCTATGCCTGCCGCTTTGAGTACGATGACCCACGCTTCATCAGGCTACTGGGCTTGTTGAAGGAAACTCTTAAGGAGGAAGCTGGATTCCTACCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061740-Cyp2d22:NM_001163472:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.1=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCCTAGCACGGTATGGGC
R:
GGTGTTAGGGCTGAAAGGGTG
Band lengths:
173-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: