MmuINT0044979 @ mm9
Intron Retention
Gene
ENSMUSG00000061740 | Cyp2d22
Description
cytochrome P450, family 2, subfamily d, polypeptide 22 [Source:MGI Symbol;Acc:MGI:1929474]
Coordinates
chr15:82202252-82203007:-
Coord C1 exon
chr15:82202820-82203007
Coord A exon
chr15:82202394-82202819
Coord C2 exon
chr15:82202252-82202393
Length
426 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CACCATGTGCCTTCTGCCAGGGG
3' ss Score
7.46
Exon sequences
Seq C1 exon
GCCGAGTACAACAGGAAATCGATGAAGTCATAGGGCAGGTGCAGTGTCCAGAGATGGCAGACCAGGCTCGCATGCCCTACACCAATGCTGTCATTCATGAGGTGCAGCGCTTTGCAGACATTCTCCCTCTTGGTGTACCTCACAAGACTTCTCGTGACATTGAACTACAGGGCTTCCTTATCCCTAAG
Seq A exon
GTAGGCCTGGGACCCTCCAATGTCTAGTCGGTGTTGCCAGCTAGCTAGTGGCCTGAGCTGTCCACTTAAGACAGGACTGGAACTTAGGCAACTCAATTCTCAATTCCACAGAACCAACTTCTACTTGGTAAGTATGGGAAGAGAAACAGTAGCAGGAACTGTACGCTAGAATCTTCAAGGCAAGCAAGGTAAAATATGGCAGGAGTGGTTGTAACAGCCACTACCTACAGACACAGGTGACAGTGTGGACATCTGTCACTTGTCACTTCTCCCTGTCATAGTATTAAAGACAGCTAAGAAGCCACTAGGGCTAGGGTTATATGAAAGGATCCAGTCTGTGAGGTAGAGACCACGCATGTGAGCTTGGTGATCAGAGTCTAGACGGCCCCACCCCAGTCCAACCTCACACCATGTGCCTTCTGCCAG
Seq C2 exon
GGGACGACCCTCATCACCAACCTGTCCTCCGCGCTAAAAGATGAGACTGTCTGGGAGAAGCCCCTCTGCTTCCATCCTGAACACTTCCTGGATGCCCAGGGCCACTTTGTGAAGCCTGAGGCCTTCATGCCATTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061740-Cyp2d22:NM_001163472:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGTACAACAGGAAATCGA
R:
TGCTGAGAATGGCATGAAGGC
Band lengths:
329-755
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: