MmuINT0044986 @ mm10
Intron Retention
Gene
ENSMUSG00000022445 | Cyp2d26
Description
cytochrome P450, family 2, subfamily d, polypeptide 26 [Source:MGI Symbol;Acc:MGI:1923529]
Coordinates
chr15:82790970-82791474:-
Coord C1 exon
chr15:82791333-82791474
Coord A exon
chr15:82791158-82791332
Coord C2 exon
chr15:82790970-82791157
Length
175 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
AAGAGATCCTATCTATCCAGGCC
3' ss Score
3.4
Exon sequences
Seq C1 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATAAGAACCTGCGCATAGTGGTGATTGACCTGTTCATGGCAGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTGCTGCTCATGATCCTGCATCCAGATGTGCAGC
Seq A exon
GTGAGCCTGGTGGGGCTGGGAGGGAGGGCAAGAGGCATTTGAGAAACTAGTGGCTCCCGCATTAGCTTGACCTAGGCTCCCACAGTCTGATGGGAGTCTTATCCATCGTATTAAAGCCAGAGGTTCAAGTTCAAGGGTGAGCAGCTTTTTCTCAGAAGAGATCCTATCTATCCAG
Seq C2 exon
GCCGTGTCCACCAGGAAATCGACGAGGTCATAGGGCACGTGCGGCATCCAGAGATGGCAGACCAGGCCCGCATGCCCTACACAAACGCGGTCATTCATGAGGTGCAACGCTTTGCAGACATCGTCCCAACAAATTTACCACATATGACATCCCGAGACATTAAATTCCAAGACTTCTTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022445:ENSMUST00000006094:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACCTGCGCATAGTGGTG
R:
TTTGTTGGGACGATGTCTGCA
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types