RnoINT0044346 @ rn6
Intron Retention
Gene
ENSRNOG00000008988 | Cyp2d2
Description
cytochrome P450, family 2, subfamily d, polypeptide 2 [Source:RGD Symbol;Acc:2471]
Coordinates
chr7:123652649-123653165:-
Coord C1 exon
chr7:123653024-123653165
Coord A exon
chr7:123652837-123653023
Coord C2 exon
chr7:123652649-123652836
Length
187 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
AAGAGATGCCATCTATCTAGGCC
3' ss Score
2.72
Exon sequences
Seq C1 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAAAATCTGCGCTTGGTGGTGATTGACCTGTTCATGGCGGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTTCTGCTCATGATCCTGCATCCAGATGTGCAGC
Seq A exon
GTGAGCCTGGCTGTGGATGGGAGGGAGGTCAGGGGAAGAAAGGCAGAGGTATTTGAGAAACTAGTGGTTCCTGCCTTAGCTTGACGTAGTTTCCCATGTGTCTGGTATGAGCCCTATCTATCTTACTAACCCAGTGGTAGAAGTTGAAGGATGAGCTCCTTTCGCTGAAGAGATGCCATCTATCTAG
Seq C2 exon
GCCGAGTCCACGAGGAGATTGATGAGGTCATAGGGCAGGTGCGTCGTCCAGAGATGGCAGACCAGGCACGAATGCCGTTCACCAATGCTGTCATCCATGAGGTGCAGCGCTTTGCAGACATCGTCCCGACAAATATACCACATATGACATCCCGAGACATTAAATTCCAAGGCTTCCTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008988:ENSRNOT00000012413:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACCTCAACCACACTG
R:
CTTGGGGATGAGGAAGCCTTG
Band lengths:
252-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]