MmuINT0045017 @ mm10
Intron Retention
Gene
ENSMUSG00000025479 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88607]
Coordinates
chr7:140770942-140773206:+
Coord C1 exon
chr7:140770942-140771083
Coord A exon
chr7:140771084-140773018
Coord C2 exon
chr7:140773019-140773206
Length
1935 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
CTTTATCCCTATCTTGGCAGAGA
3' ss Score
7.19
Exon sequences
Seq C1 exon
GAAAAACACAGCCAAGAACCCATGTACACAATGGAAAATATTTCTGTGACTTTGGCCGACCTGTTCTTTGCAGGAACAGAGACCACCAGCACAACTCTGAGATATGGGCTCCTGATTCTCATGAAATACCCAGAAATTGAAG
Seq A exon
GTACATGAATGAGAAGCCAAACTCCCATACATCATATCTGAGACCTGTCAGGGTCGCCCTGTGCAATTCAGGCCTCAGTTGTCATTCTGTAGCCCAGTCACTAAATGAACTTCTTTAAAAGCACATGACCTTGTATGTGCCAGGACCTAGTATCCTGATGACTGGCTAGTCCCCTACACACTCCACTGGGATGTTTATGGCCCAGTGCTGAAATGGAAAGGGGAATGAGTCTGTGATCTGCTCTGTAAATAATTTCTGATGAAGAAAACAATGTTCCAATTTCCCCTGAGAAGCATTTCCTGGATTTATAGGCTGAGACAGGGATACCAGTCAGGTTGGAGTGATCCCAGAGCATCTTACCCCAGGAAGCTCTGAAGTGGACGCTGAAAGAAAAGCAATTCAGGCTGTCTTAAATCCATTTCACTTCCTCTTCACGGCTTAGGAAGCAAAATCTGGGCAGAAAGAATTCTGTGCCTGAAGCAGGCACGGGATCTTAACACAGTATGCAGAGGGTCATACATACATTTACCAGATAGAGGAAGTGTGAGGATCCCTACATGTAAGTCATTGGGGCTCACCTTTAGTAAAGAAACTGGGGGGGCTGACAAACTAAGGGGAAGGTGCTCTAAGGCCTGAAACCTTGCCATTCTCTGAGCTGGGCATAGATTGGGCAGCTACTGCATACAAAGCAATGTTTCCCAAGAACATTATTGTGTGTCTGTCTGGTCCAGGTCTAAGATCTGAGCTCTGGCCTTCCTGTCAGCAATGCCTTTGACTTTCCACACCACAGAGAAAAAAAAATGGAATATGACTAAAGTCCAAGGAGGGAAATATACAAATTACAGTAGCTAGAACTTTTATTACTGTGCTAGGGAAACATAAATTTTAAAATGTTTTAAATTAGTAACATAATGGATTTCTAAAATAGTCAAGGAGTAAGTAAATGTGACAGCTATCTATACATCGATTACCAAATTGGACGTCTATTGACATTTTGTGATGTTTGCTTTGGAGCTATTTTTAAAATGAAGCATTATACGGCCAGCTAGAGCCCCACTAACTCAAACTCCCCTGCCTCACTCCCCAGATACAGTGATGCTTCAGGTCCACTATGTAGCATGCCTGTGTGACATGGACATTTAATGTTAACTAAATATCAATGCATAACTAATATTTTATTTTATGCATGCTTTAGTATTATACCATACCATACACAACTTATTGCAACTTGCATTTTTTTTTACTCCACATATTATAAAGTTCCATAGTAAATCCCAAACACAGAAAGACCAAGGAACTTGACAAAGGTTGCTATTGCCTGTGTCATGATCATGGGGGCTTTTAAACTTCATTAACTATGGACTAGTCTGTCACCCTCTTCCTAATTTTAACAACAGTAAACTGTCCTAGAGTAAACAATGCAAAGGTTTCCCTCTAAGAAGACATTTCCAAGACCCTTTTATCTCTACTGCTGATTGGAAAAAATATCACAAACTATGTCAATAGATGCCCAAACTTCCTGTCAACTGTGAATAAGCTCACAGGTCTTAGCTTTCACTGGCACTTATAAGGAAATGATTTGGCAATTCAAAGTACTCAGGGCTTATAAACGTATAATATAACTCAGGGTTAAGTGCTCCATAAACATCTACTGGGTGGCTTGGCAGACACACGGAAGAAGAGTTAGACAGATATGTAGGTGAATGGAACTATTGCAGGATCGTGGGATAGATGGATGAGAGGGAGAATGAGTAGGTAAGAATGTGGAGGGTGCTATACTGGTGGGTAAATGAATATGTAAGTGTATGGAAAAACGGGTGGGTTACAGGGGTAAATAGGTGAGCAGGCAGATGGAAATGATGATATGGGTAGATGGTACGTTTACATCCATTCTAGATTTAACCCTTGAGACTGACTTTATCCCTATCTTGGCAG
Seq C2 exon
AGAAACTTCATGAAGAAATTGACAGGGTTATTGGGCCAAGCCGTGCCCCTGCAGTCCGAGACAGGATGAATATGCCCTACATGGACGCTGTAGTGCATGAGATTCAGAGATTCATCAACCTCGTCCCTTCCAACCTGCCCCACGAAGCAACCCGAGACACCGTGTTCCGAGGATATGTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025479:ENSMUST00000026552:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(0.1=0.0),PF0006717=p450=FE(21.8=100)
A:
NA
C2:
PF0006717=p450=PD(0.8=1.6),PF0006717=p450=FE(36.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACAGCCAAGAACCCATGT
R:
TGACATATCCTCGGAACACGGT
Band lengths:
318-2253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types