MmuINT0045026 @ mm10
Intron Retention
Gene
ENSMUSG00000052974 | Cyp2f2
Description
cytochrome P450, family 2, subfamily f, polypeptide 2 [Source:MGI Symbol;Acc:MGI:88608]
Coordinates
chr7:27130294-27131357:+
Coord C1 exon
chr7:27130294-27130435
Coord A exon
chr7:27130436-27131169
Coord C2 exon
chr7:27131170-27131357
Length
734 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
CCTTCTCCTTCTACCTCCAGCCC
3' ss Score
10.29
Exon sequences
Seq C1 exon
GAGAAGCAAGACCCACTGAGCCACTTCAATATGGATACCCTGCTGATGACCACACACAACCTGCTCTTCGGTGGCACAGAAACCGTGGGCACCACACTGCGTCACGCCTTCCTTATTCTTATGAAATACCCCAAAGTGCAAG
Seq A exon
GTACACGGGCAGCAATGTCCCCTCTACATTACCTCCTCCCTTCTCCTACCCTCCACCCCCACCCTACCCCGTCCAGAGGGTCTAGTAGAGCCCTCCATTAACAACCCTCTCATACAAGCCAAACCAACTAAGAGGCCCTCAGGGTCCACACAGTGCCATTCCCGACCATACCTGAGTACTATTGGCCCTGCCCACAACACATGCGACTGTCTGTCTGGCCTCTGAATCCTTCTTCCTCTGTCATCTCAAAACCCCGCCCCTGAGACCCAGTCACAAGGTCTGCTAAGAACCTTGAACTCTTCTGAATAACATGACTCCCTCCAGCACATAAGCCTCCCCTTCCCCAGGCTCCGCCTCCTGGGTGTCTTCCTGGCTTTGCGGGAGATAGCTGCACTGCCCACACACTAGGTCCATGAGCCTCAAAGCCCTTCCAGAAATCAAATGAGGATCCTAGGATCCAAACAGCCCTAAAGCCCACCTACACAAACTCACACCCAGAAACCCATGCAACAATCAACATTTTTCCCTCTTGAAAACAAATGCTTTGAAACCCAGACTAACCAGAACTCACAGCTATCTTCCTGCCTCAGCTTCCTGCGTGCAATGATGACAGGCCACTGCCTACAACTAGAAAAGCTCTGACTTGATCCTGTCCCATGAACTCCCACAAACCTGCCCCAGTCCCAGCGGTTCCTCAGAGACCATCATTCACTACCTTCTCCTTCTACCTCCAG
Seq C2 exon
CCCGCGTGCAGGAAGAGATTGACCGTGTGGTGGGGCGCTCGCGGATGCCGACGCTGGAAGACCGTACATCCATGCCTTACACAGATGCAGTGATCCACGAAGTGCAACGCTTTGCTGACGTCATCCCCATGAACCTGCCTCACCGTGTCACTCGGGACACACCTTTCCGGGGCTTCCTGATACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052974:ENSMUST00000003100:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(29.6=91.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCAAGACCCACTGAGC
R:
GGTATCAGGAAGCCCCGGAAA
Band lengths:
326-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types