MmuINT0045026 @ mm9
Intron Retention
Gene
ENSMUSG00000052974 | Cyp2f2
Description
cytochrome P450, family 2, subfamily f, polypeptide 2 [Source:MGI Symbol;Acc:MGI:88608]
Coordinates
chr7:27915313-27916376:+
Coord C1 exon
chr7:27915313-27915454
Coord A exon
chr7:27915455-27916188
Coord C2 exon
chr7:27916189-27916376
Length
734 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
CCTTCTCCTTCTACCTCCAGCCC
3' ss Score
10.29
Exon sequences
Seq C1 exon
GAGAAGCAAGACCCACTGAGCCACTTCAATATGGATACCCTGCTGATGACCACACACAACCTGCTCTTCGGTGGCACAGAAACCGTGGGCACCACACTGCGTCACGCCTTCCTTATTCTTATGAAATACCCCAAAGTGCAAG
Seq A exon
GTACACGGGCAGCAATGTCCCCTCTACATTACCTCCTCCCTTCTCCTACCCTCCACCCCCACCCTACCCCGTCCAGAGGGTCTAGTAGAGCCCTCCATTAACAACCCTCTCATACAAGCCAAACCAACTAAGAGGCCCTCAGGGTCCACACAGTGCCATTCCCGACCATACCTGAGTACTATTGGCCCTGCCCACAACACATGCGACTGTCTGTCTGGCCTCTGAATCCTTCTTCCTCTGTCATCTCAAAACCCCGCCCCTGAGACCCAGTCACAAGGTCTGCTAAGAACCTTGAACTCTTCTGAATAACATGACTCCCTCCAGCACATAAGCCTCCCCTTCCCCAGGCTCCGCCTCCTGGGTGTCTTCCTGGCTTTGCGGGAGATAGCTGCACTGCCCACACACTAGGTCCATGAGCCTCAAAGCCCTTCCAGAAATCAAATGAGGATCCTAGGATCCAAACAGCCCTAAAGCCCACCTACACAAACTCACACCCAGAAACCCATGCAACAATCAACATTTTTCCCTCTTGAAAACAAATGCTTTGAAACCCAGACTAACCAGAACTCACAGCTATCTTCCTGCCTCAGCTTCCTGCGTGCAATGATGACAGGCCACTGCCTACAACTAGAAAAGCTCTGACTTGATCCTGTCCCATGAACTCCCACAAACCTGCCCCAGTCCCAGCGGTTCCTCAGAGACCATCATTCACTACCTTCTCCTTCTACCTCCAG
Seq C2 exon
CCCGCGTGCAGGAAGAGATTGACCGTGTGGTGGGGCGCTCGCGGATGCCGACGCTGGAAGACCGTACATCCATGCCTTACACAGATGCAGTGATCCACGAAGTGCAACGCTTTGCTGACGTCATCCCCATGAACCTGCCTCACCGTGTCACTCGGGACACACCTTTCCGGGGCTTCCTGATACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052974-Cyp2f2:NM_007817:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.206
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGCAAGACCCACTGAGC
R:
GGTATCAGGAAGCCCCGGAAA
Band lengths:
326-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: