MmuINT0045122 @ mm9
Intron Retention
Gene
ENSMUSG00000027983 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1918769]
Coordinates
chr3:131000704-131006145:-
Coord C1 exon
chr3:131005598-131006145
Coord A exon
chr3:131001340-131005597
Coord C2 exon
chr3:131000704-131001339
Length
4258 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
CCTCCCCTCTGTCCTTGCAGGAA
3' ss Score
13.87
Exon sequences
Seq C1 exon
GCCTTGCCCTGCCTCGCGGTTGACCTTGAGTCATGTAGCCGGCTACTGTCGCGGTGCCGGCGCGTCTGCAGCGGAGCTAGATGCAGGCGGTACCTGGGACATGTCCTCGCTCGGGGACCAGCGTCCCGCGGCAGGGGAGCAGCCGGGAGCTAGACTGCACGTGCGGGCGACAGGAGGCGCGCTGCTACTTTGCCTGCTGGCGGTGCTGCTAGGCTGGGTTTGGCTGCGGCGGCAACGCGCCTGCGGCATCCCTCCGGGGCCCAAGCCTCGGCCACTCGTGGGTAACTTCGGGCACTTGCTGGTGCCGCGCTTTCTACGACCGCAGTTCTGGCTGGGCTCGGGCAGCCAGACGGACACGGTGGGCCAGCATGTGTACCTGGCCAGGATGGCCCGTGTCTATGGCAACATCTTCAGCTTCTTCATCGGCCACCGTCTGGTGGTGGTCCTCAGCGACTTCCACAGCGTGCGCGAGGCGCTAGTGCAGCAGGCTGAAGTGTTCAGTGACCGCCCGCGGATGCCGCTCATCTCCATCATGACCAAGGAGAAGG
Seq A exon
GTGAGCGCGCCGCGGGCTCAGGATCCCCAGGCGGCAGGACCTGCGTCATGACCAGCATAGGGGATAGAGGACGGAGGCGTGGCTTTCTAGTGTGCGATTAAAGTGGGAGACACACTGGAAAGTGAGGGAGGTGTGGGCACCAAACTGTAAAATAAGGACCACCCACCCCGGAAGCCTTCCTTTGTCCCAAGTGAGGCCTTCTCACGCATAGGTCTGATCTCAACGTTTCTAAACATTGGCTGTGTTAGGAAAAGGGGGAGGGGGATTCATTTCACCGAGTATCATTCAGTTGCAAAAGTATAAGAAGATATTTTTTTCCCCCTTAGGAATGGCCAGAATCCAAGCTAGGAGACTGGTGAACCGGATGTGTTCATAGCCTCTAATATTTTGGCAAAGAATGTGGCTGCTCCCCGCGGGTGACTAAAGAACTTGCCTGAGGTTAAATTTAAGAGAAAGTGACTAATTTTTTTGAGAGAATATTTCAAGATAGCCAGTCTGTTCCCAGAGCCCGTGTATATCTCCCTCGGCAGACACAGGGTCTCGATCTCCTATTCTCCAGCCACCTGTCAATCCTGTGTTCTGTCTTCAGACACTGAAGTACAAGACTGAATCCATTGTGGGTGGCATATATATGCTTCGGTTCAGGAGAGTGGCCCCCTGACTTCATACTTTGATATCCCCTCCCTCACCCCATTTCTAATTTTGCCTTGGAAACTCCCCATGTAAGGCCTCAGAAAGCTCTGGAATTGGAGGCACCTGTAATGGGGAGGGCAGGTGTGAGCACTGGGCTGGAGCACGGAGAGCTTGACTGCTATATCAAGGGTAGTTAGTTCTTGTTCCTAAGGCCACTCCAGCCTCTGCAGAAAACAGAAGTTGGATGCGCTGAATTGCGTGCACCTTAGTGGCCTCTTGGCTAGAGTTGGGTTCAAGATGAAGGGTGTATGACAGCCACTGTGTAAGATGCTTCTGATTTAAGACAGGGATCTGTAAACGTTCACTCTGAATGAAATTTAGAGTAAGGATACACAACTAATCTGGCCACTGGTGAAGGAAGACCAGGAAATCTCTCTTGGCTTAAACCTCCAGCGTTCTGCCCTCTCTTCATCTGATTTAAGTGACAACTCAAGTTTATAGCCATCGGCCACAGTAAACAGACTACCAGTGTTCTGGGTCGTGTTCAGACCCCAAGGCAGGAGAATCACCTTGGCATTCTGGCTACCAGCCTAGCAGCGAGCTGATTCAGTAAGAGGCAGTCGACAGAGTAAGGCCGAGAGTGACAGATCGGGACACATGGAGGCCCTTCTCTGGCCTCCTCATGCACCTGCCTATGGGTTATACACCCTCAACCCCACCCCAGTTATCTATATGAAAAAAAATGTATTTTTATCTCACTGGAATTATAGGTAAGTCATAGAGAATTAATTAAAAATGAAGAAAATAAAAAATCTGGGGCCTGGAGAAATGGCTCATGTGATTGAGAGCATTTGCTATTCGTCCAGAGGGCCTAGGTTCAGTTCCCAGCATCCACAAGGCCCTGCCTAACTTTCTGTAACTCCAGTTCTGGGGGATCCAGCAGACTCTTCTGGTCTCTGTAGGCACCAGGCACACATATAGTACACATACATACATTCAGATAAAACATGCAGAGATGGGGCTGGCAAGATGGCTCAGTGGTTAAGAGCACTGGCTGTTCTTCCAGAGGTCCTGAGTTCAAGAGCCAATAACCCACATGATGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGAGAGCAATGGTGTACTCATATTCATAAAATAAGTAAGTAAATATTTTTTAAAAACATACAAAGTAAAAATAAATCTTAAAAAATGTTTTCAAAGTCAGCATTTTAAATTTTTATAAGAAAATGGTGTGTTTCTGAATCCTTGGTAGGAAGGGATTTCTAAAATAAGACCTGTAGCATAAATCATAAAGAAAAGGACCTGTAGACAGGCACAGTGGCACAGCAGCACTTGGAGGGGTTGAGGCAGGAGGATTGCCACAACTTCAAGGACAGCATAGACTTCAAAATAACACTCTATCTTTTAAAAAGCGAGAGAAGTCTTCATGTGGACTGGAGAGATGGCTCGGGTTAGCACATACTGCTCTTTCAGAGGTCCTGAGTTCAGATCTCAGCTTCCAAGATAGGTGCCTCCAACCACCTTTAGCTCCAGCTGCAAGGAATCCAATGCCCTCTTCTGGCTTCTGTGTGCATGTGGGAGTGCGTGCACACGCGCGCACACACACACTCGTGATAAATCAGTGTTTTTTAATCTACTTGTGGTATCTTTAAAACTTATGCTTATCAAGTAATACTATTAAAAGCAAAAACTAACTCATGTAATGAGAGAGAGAGGAGGTTTCACCTATGCACTTACACTATATAGAAAGAAAATCTCCACACAGCACACATTAGGTAAGGTAAGTGTGACATCTGGAATAAGAGCCCCATCAGTGACCTGGGTAAAGCCACTCTGACCTACACTGACAATCACGGAAGTGTGAATGAAAATCACTTGAGATACAGTTTCTCCCTCTAGTGGCCAAACTAGAATATTACAAGTATCAAGAGGCAGCCGTTCAAAACATGGTGATGTTCATATACTCGTGGCCGTCCTTTTTCTCCATTCTAAATCTACTTAAGACAGTAATTTGGCAGTGACTATTCATGTGATGATACCCATATTTTATGGCTCGTCACTGCGCCCTTAGTGATGTCTGTAAAATGTGAAGAAAGTCCATATTCAACCCTGGGTCCATCCATAGAGATGTTTATTTTGAAATGATCTCTTTTCCCCTGTTGCTGGGGATTGAACCCAGGGCTTTGTGAATGCTAGTAGTAGTAGTTTGTGCTGTACTGCTGAGCTGACCCCTGACCCTTGATTACAGAGGAACTTACAGTATAAAAGAACCAACAACAGAACTGGTCTTTCTCTCTTTCTTTTTTTTTTTTTAATTTTATTTTTATTTATTTAAATTTTTTGTTGTTTTTTGAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCTTCTGCCTTCCAAGTTCTGGGATTAAAGGCGTGCGCCACCGCTGCCCGGCTCCATCTTTCATTCCCAACTGAATATTGCACACCACACGCTAAGGATTCAGAACATGGCGTCGGCAGTTTGAATGTTGACTGACCCCCGTGGGCTCATGTGTTTCAATATTTGGTCCTAACTTGTGATAGTAGTTTGGGAAATTGTAGAACTCTTAGAAGGTCAGACCCAGCTAGAGGAAGCTGGTCCCTGGGCCTTGTGTGTGGATTATAGCCGAGCCCTGGCTGTGGTCCAAACTTTGTGCTTCCTGGCAAAGGCGTGAGCAGTTTCCTATTAGGTGTTTATTCACAGCAAAAAGCAAAGTATCCAGTGTGGAGGGGACGGGAGATGTGTGACCTACACAGCTTTGGAGTTGACCTGCCTCGGGCCACTGGGGAAGGAAGAAAGGACAGACATGTAGAGCAAAGCTGGGACCCGCTGGGCAGCACAGTCTGATGGGGATGCTCAAGCGGCAGCCTAGAAACAACTCCACGCACGTTTATTGTATGCACGTGGACCGAGGAGGCCGGGTTACTGTCTACAGTTGAGCAAGGGAGGCAGGATCAGCTCTTCTTGGTAGGAGAGGTCTCTACAGAGGTGCAAGCTCAGGCTATAAACCTCAGGAAGGAGGAAGCTGCGCTCAGTGCTTTCTGCACGCGCTGTCAGCATCCACACGTGGACCAGAGGAAGGTTCTGCCTTTCTTTGAATCTGATGTGGGGGTGAGGGCCTTGCTATCACTTAGCTTGAGGGACCCTTAACACGGCCATGTTCATGTCAGCAGCACAGGCTTGCTCAGGACTTCATCCGACCCCCATGGTGGTCGATGTATGCGTTGGGGTCAAATAGGACGCAGCCATCGGGAATCCGGATGAGTCCAGGCTCCTACTGTGTGCAGCACTGTGCCAGGAGCTGGGCTTTGAAGGTTTTCTAAGCCTGAATCTACTGTTGTGAAATCGAAAGATACTTAAGTGCACAAGAATTTTAGGCACTGCCTCTATCTGCATCTGAACATTGGCCTAGAGACTTGAAAATACAGACTATGCCTCCCCGGTGGCTCCCATTCGCTATACCCAGGCCTTGCTCTCACCCTCCCTCCCCTCTGTCCTTGCAG
Seq C2 exon
GAATCGTGTTTGCACACTATGGTCCAATTTGGAAACAGCAGAGGAGATTCTCCCACTCGACGCTTCGTCATTTCGGTCTGGGCAAGCTCAGCCTGGAGCCCAGGATCATCGAGGAGTTTGCATACGTGAAAGAAGCCATGCAGAAGCACGGGGAGGCCCCCTTCAGCCCCTTCCCAATCATCAGCAATGCCGTCTCCAACATCATCTGCTCCCTGTGCTTCGGCCAGCGCTTCGATTACACCAACAAGGAGTTTAAAAAGGTGTTGGATTTCATGTCCCGGGGGTTGGAAATCTGCCTGCACAGCCAGCTCTTCCTGATCAACATATGCCCCTGGTTTTACTACCTCCCCTTTGGTCCATTTAAGGAGCTAAGGCAAATCGAAAGGGACATATCCTGCTTCCTGAAAAACATCATCCGAGAGCATCAAGAGTCTCTGGATGCCAGCAACCCTCAGGACTTCATAGACATGTACCTTCTGCACATGGAGGAAGAGCAGGGAGCCAGCAGGCGCAGCAGCTTCGACGAGGACTACCTGTTCTACATCATTGGGGACCTCTTCATCGCCGGCACTGACACCACGACCAACTCTCTGCTCTGGTGCCTGCTGTACATGTCACTGAACCCCGACGTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027983-Cyp2u1:NM_027816:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(45.5=54.0)
A:
NA
C2:
PF0006717=p450=PD(5.1=9.9),PF0006717=p450=FE(58.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: