MmuINT0045316 @ mm9
Intron Retention
Gene
ENSMUSG00000084346 | Cyp4a30b-ps
Description
cytochrome P450, family 4, subfamily a, polypeptide 30b, pseudogene [Source:MGI Symbol;Acc:MGI:3717145]
Coordinates
chr4:115127588-115129332:+
Coord C1 exon
chr4:115127588-115127632
Coord A exon
chr4:115127633-115129204
Coord C2 exon
chr4:115129205-115129332
Length
1572 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TGTTTATATCTCTGGCCCAGGCT
3' ss Score
5.99
Exon sequences
Seq C1 exon
ATCCAAAAGTTGTACGCTCCTACAGTTTCTTTGCTCCCTGGATTG
Seq A exon
GTATGTATGCTTAAACTGGGACTGTGAACACTACCCACTTAGCTTCCCCAACTGTGGCCTCTGGATCATAGGGTAACAGTTGTGACCTATGTTATGATCTCGGTTTTTTGCCTTTTTTTATTAGATATTTTCTTTATATACATTTCAAATGCTATCCTGAAAGTTCCCTATACTCTACCCCCTGCCCTGCTCCCCTACCCACCCACTCCCACTTCTCGGCCCTGGCATTCCCCTGTACTGGGGCACATAAAGTTTGCAATACCAAGGGGTCTCTCTTCCCAGTAATGGCTGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGATATGCTTCTAGCCAGACTCTCACTCCTACCTAATGTTGAGCCTGCCTGAACCTCAGTTTTTGGCATGTCATTCCTCTGATATTCCAACTGCTACTTCTGCTCTTCATGACTCACTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTATTTTGTTTGTTTTTATTAGATATTTTATTTATTTACATTTTAAATGTTATCACCTTTCCCAGTTTCCCCTCCACAACCCCCCTATCCCATCCCTCCTCTCCCTTCTTCGATGGTGGTGCTCCCCCTCACACCCACCCACTCCCATCTCACTGCCCTAGCATTCCCCTACACTGAGGCATCAAGCCTTCACAGGACTAAGGGCCTACCCTTCCATTCATGCCAGATAAGGCCATCCTCTGCTACATATGAAGGTGGAGCCATGGGTCCACTTTCATTGGTGGTTTAGTCCCTGGGTACTCTAAGGGGTCTGGTTGGTTGATATTGTTGTTCTTCTTATGGGTTTTCAAACACCTTCACCTCCTCCAGCCCCTGCCCTAACTCCTCCATTGGGGTCCCTGTGCCCAGTCTGATGGTTGGCTGCAAGCATCCACATCTGTATTGGTCAGGCTCTGGCAGAGCCTATCAGGAGACAGCTATATTAGGCTCCTGTCAGCAAGCACTTCTTGGCACCAGCAAAAGTGTCTGGGTTTGGTGTCTGCATATGGGATGGATCCCCAGGGGGTGCAGTCTCTGGATGGTCTTTCCTTCAGTCTCTGCTCTACTCTTTGCCCATGTATTTTTTAGACAGGAGCAATTCTGGGTTAAAAATTTTGGAGATGAGTGGGTGGACCTGTCCCTCATCTAGGATCCTTGTCTCACCTCTGGATATGTTCTCTACACGTTCTCCCTACCCATTCTTGCAGCCGGACTCTCACTCCTACCTAATGCTGAGCCTCCCTGAACCTCAGCTTTTGGCATGTCATTCCTCTGAACTTCCAACTGCTACTTCTGCTCTTCATGACTTCTTTTTTTCAACCCTCATCTCACAGCTGTCATAACCACAGCAATCATACCAGCCTAGCTGTAATATTTCCATTTCTGAAATACACTGAATCGTTTATTCTGTTGTCTAAGAAATTCTGCCTTCCTCAGAGTTGTTTTGCAAATTTCAAACCATAGTTCCTTCAAAATCATCCAAAGGGTCTCTGGGTCTGTCTTTCTTCAACAAATATGTGTTTATATCTCTGGCCCAG
Seq C2 exon
GCTACGGTTTGCTCCTGTTAAATGGGAAGAAATGGTTCCAGCATCGGCGAATGTTAACTCCAGCCTTCCACTATGATATCCTTAAGCCTTATGTGGGAATCATGGTGGATTCTGTCCATGTGATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000084346-Cyp4a30b-ps:NM_001100185:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: