GgaINT0035771 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNP0]
Coordinates
chr8:20786450-20786893:+
Coord C1 exon
chr8:20786450-20786494
Coord A exon
chr8:20786495-20786765
Coord C2 exon
chr8:20786766-20786893
Length
271 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
GCTGTTTCTGGTGTCTACAGGCA
3' ss Score
8.43
Exon sequences
Seq C1 exon
ATCCCAAGCCTCCTGTACCTTATCAGTTCTTAGTTCCATGGATTG
Seq A exon
GTGAGCAATTTTCTTCCATTAAGCCTATAAGCTGCGTCACACATTTCATTATTCTCTTCCTTTATTTCACTTTCTTCCATCCTAAAACCAGAGCATGCAAGCAGGAGGGTTAGGCTGTGAACATTAGCACTGGAGTTGTCCCCATCGTTGAGCAGCATGCCTTCCCCCCCCAGGCCCTGAACATCACCTGCTGCTTGGCCATGAGCAGCAGTGAGGCTGCTGGAGCCACGAGCAGAGTGGGGTAGCTGATGGCTGTTTCTGGTGTCTACAG
Seq C2 exon
GCAAAGGGTTGCTGGTCTTGAGTGGAACCAAATGGTTTCAGCATCGGAAGTTGCTCACTCCAGCGTTTCACTATGATGTGCTGAAATCTTACGTGTCCCTGATGTCAGACTCAGTCAAAGTGATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCAAGCCTCCTGTACCTT
R:
AACATCACTTTGACTGAGTCTGACA
Band lengths:
172-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]