RnoINT0044640 @ rn6
Intron Retention
Gene
ENSRNOG00000043513 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:RGD Symbol;Acc:628719]
Coordinates
chr5:133944002-133946036:-
Coord C1 exon
chr5:133945992-133946036
Coord A exon
chr5:133944130-133945991
Coord C2 exon
chr5:133944002-133944129
Length
1862 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TGTGCATTTTCTTCCTCAAGGAA
3' ss Score
7.87
Exon sequences
Seq C1 exon
ACCCAAAGACCCAGTACCTGCACCAGCTCATGACTCCCTTTCTTG
Seq A exon
GTATGTATGTGACTCCCATTCTCACTCCATAGCACAGCACACCAAAGAGACTCAAATCTGAGCTCAAAAGCATCAAGAGAGGGACATCAGATACATGTGACTTGAATCAGAGTCGGGGACCATATGGGAGAAGAGAACAATTTAGAGGGAGGCAGGGGACAGAGGGGGAGTTGGGGTAGAGGCAGAAGGAGAAGGAATCAAGTGAGCACTGAGTGTAATGACGTAAATATGAAAATGCCGTGATTCAAACCAGTGTTTTGTATTCCCACCTAAAAATATTATTTTTAAAATTTAAAAATGGAATCTAGAGACACTGATTTAATCCCCATTGCCTACATTTTTAAAAAAAAGAAGAAGAAGAAGACAGAAATAGGCAGGTCTCTGGGCTAGACAACCGGTATAAGCTATTCATAAATTCCAAGCTAGTGAGAGGTCCTATTTCAATTTAACAACAACAAAAACCGACACTGGACGACAAATGAACAAACACACAACATTTCTAAAGAGTAAGATCTGTGAGGAGAGTCATCTAGGAAAGAGTTAAACATCAACCCAGTGTCAAGGTCAACCCAGCAAAACATCACAGAAAGCACCCTTGTCTGTTTCTCTCCTCAGGGTCCCATTTTCAATGCAACACTTGTGTGAATTCCTCAGTCTTAGCTACACTAAGGGAGAATTTAATTCTCTTCTCTCATGCCTCCTTATATATTTCCTTTCTTTTCAAAGTTCTCTTATTTTTATATGCCTCTCAGTAAATTTTTCTCTGACGGGCATTTGGCGTTATCCTTGGAGCAGATAAATTAAGCTGCTTTCTTCCTGTCGTTGATGTTTATTTTAGCCCAGGAAGGAATTAAATGAAAGAGTGTATAGGCTTTGGACTCAGAGCCCTTAGATTCACACACTGCTGTTCACGCCAATAGACTACTTGAGCATGATCTTAGGGAAGAAATTGAATCTAAGACTCATTTTCCTCATCTCTGAAATGATCATGAGAGGCGGCGCTGTGGCTGCTGATTGGTGACTGCCAGATTCCCAGTACTTTTTGTAATGGCCGGCGTTCTAAGAGCACCAAACCAGATGTCACAAAGCTGGCATTTTGTAAGCACTCAGAAAGGGATGTCATTCACAAAATCCCAGCACTGAGAGTGGGAAATGACCACAAAGTCTCACCCTAACCTGAAAATTATTTGTAATTAATACCTGCTGGGAGAGGGAAAATGAGCGTTCTCCAACAGAGTGTCACTGTGTGAATTAACCACATTTTGGGGCAGGGTCCATTCCCAGGAGTAGTTGGCCAACACAAAACAGACGCCCTGGTTCATTGTGCTCTTTGTTTCAGTTTGGTTTAATCTTATTCACTTTCTCTTGTTTGTTTGAACATTTTGATTCTCACTTTTTCATTTTTTACAATCTTTTCTTTTTTGAGAGAAAGGGAGAAAAAACATGGAGTCAAAAAACAGAGAGGTAGGATCTGGGAGAAGGTTGGGGAAGACAAAAATACATGATCAAAATACATCGTACAAAAAAATGTTAATAAGAAGATATAAAGAATGCTATTCAAACTTAAAGCCTTAAGCTAAGGTTAAGTGCCTTGTGTGTGTGCCTTCATTGAATACACACCACAGAAAACCACATCCCATCACTGTGAGACTAAGGTTCATCAGGTCTCAAAGCCTTTCTCACAGCACTGAATGCGTTCACCCTGCTGTGAGCATCAGAGCCAACCGTCCTCATCTGTCAGCTTCTCAATGCCCACTACTACTCCCTGCCTGCTCGTGCGTCAGTGACATCAGGCTGTCTATGTTCCGCATCTTTCCTCACCTACTAAGATGCATGAGATTGTGTGCATTTTCTTCCTCAAG
Seq C2 exon
GAAGAGGACTCCTGAATTTAGATGGGCCCAGGTGGTTCCAACACCGCTGCCTCCTGACTCCTGCGTTCCATCAGGACATCCTAAAACCATGTGTGGACATGATGGCCCACTCTGTGAACATGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043513:ENSRNOT00000011985:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
NA
C2:
PF0006717=p450=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]