HsaINT0044548 @ hg19
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:20244]
Coordinates
chr1:47497108-47499040:+
Coord C1 exon
chr1:47497108-47497152
Coord A exon
chr1:47497153-47498912
Coord C2 exon
chr1:47498913-47499040
Length
1760 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
TCTGCCTTTTATTTCTCAAGGAA
3' ss Score
8.45
Exon sequences
Seq C1 exon
ATCCCAAGTCCCAGTACCTGCAGAAATTCTCACCTCCACTTCTTG
Seq A exon
GTATGTATGTGCAAATGAGAGGTATAACCCACTCTCATTCAAAGTCCCCTTTCCATAGTAGAGCATGCCAAAGAAACTGAAATCTGAATTCAAAAGCACAAAGAGTGCAAGGTAGAGCTATACTGAACGTTATCTAGGGGAAAGATTGAAGGGGAGCTCTAAGGTCAACACACCACCACTTCCCAGAAAGCTTCTTCATCCGTTTCTCTCCCACAAAGTCTTATTCTCAAGGCAGCAGATACATGAATCTGTCCCCTCTCTCTTTAAAACTACAGCCTTGGCCAGGCACAGTGACTCATGCATGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATCACTTGAGGTCAAGATTTCAAGACCAGCTGGGCCAACATGGTGAAATCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTAGCATGTAGGCCTGTAGTCCCACTACTTGGGAGGCTGAGACATGAGAATCGCTTGAACCTAGGAGGTGGAGGTTGCCGTGAGCTCAGATTGTGCCACTGCACTCCAGACTAGGTGACAGAGCAAAACTCTGTCCGCAGCCCCCAACAACAAAAAAAAAACTACCCAAACTGCAGTCTCACCATCCCTATTCTTGTTTTCTTTATCCTTCTCTCGTTTTCTTGGATGTTTTCCTTTCTTTTTGGAGTTCCTTTATTTCCACATGCGAGTCAGTAAAATTTTGCTCTAGAGTTTGGCAATATTCTGTCAGCAGATAAACTAAGCTCTTTAATTACATAATTGGTATTTATGTTAAACAAGACATGAATGAAAGAAAAGAATATAGGCTTGTATTAGGAACCACTTAAATTTGAATCTTGCCCCCTCCTGCATTGACTAGTTAAATATGATCTTGGGGAAGTCATTTAATCTCTCCCTATCTCAGTTTCCTCATCTTTGACAATAAGGATGAGACTCACATTGCTGGGCTGTTATGAGGATTAAATGAAATACATATTTTTAGCACTACATGTAATGGCCACCATTGTATGAGTGACAGATCATGCATCATGAGCCTGGAATGTTGTAAGCATTCAATGAATGGTATCAATTATGTATTAATAAACTTTAAAGTCCTTTTAAAGCCAAATCCTAATGACCAGTCTGGCAATAGAAGATTGTGAAGCATTAGCCTTGGTAAGTATTTCCACATAGTATCATTCATAGACCTGGGCTCAAGGAGGAAATATCAGGGGACAGAGTGGACACTCTTGTCTCTTTCCTTGTGAATTTATGTTCATCATATAGTTTATGGATTGGTTTGGAGTGGAAAGGAATTCACTTGCTCTGTTACTAGTGTGAGCTAGGGAGTAGGTTGGCTACCTTATGTATTCACTTTCAGTTAACCTCCACAGCAACACAGGGAAAAAGGTATTTAGTATCATAGTTCATTATTGAGAAAAGTAAACCTCAGGAAGATTGAGTCACTTATTCAGTTACTACATAGGTAGTAACTGGTGATTTCAGGATTAGCGTGCTAATCTTATAAGGCTTTGAAATTTATTAGACTTTGAAACTGTTTCTCACAATATTAAATACATCCATCCCAGAGGTAAGCTTCTAAATTCACCTTCATCTATTAAATTGCATTGCACATTAATACGAGTACTACTTTGATACTCCACTGTTGCATGACTGCCTGTGGGTCATGGTTACTCCACGCTGCCTGTGTTCCTCATCTATCCTTCATCTCATCTAATTAAATGGCATAAGGTTTTCTGCCTTTTATTTCTCAAG
Seq C2 exon
GAAAAGGACTAGCGGCTCTAGACGGACCCAAGTGGTTCCAGCATCGTCGCCTACTAACTCCTGGATTCCATTTTAACATCCTGAAAGCATACATTGAGGTGATGGCTCATTCTGTGAAAATGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-CYP4X1:NM_178033:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
NA
C2:
PF0006717=p450=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)