BtaINT0046275 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013481 | CYP4A22
Description
Bos taurus cytochrome P450, family 4, subfamily A, polypeptide 22 (CYP4A22), mRNA. [Source:RefSeq mRNA;Acc:NM_001098990]
Coordinates
chr3:99922845-99923470:+
Coord C1 exon
chr3:99922845-99922889
Coord A exon
chr3:99922890-99923342
Coord C2 exon
chr3:99923343-99923470
Length
453 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
CACACCCATCCATGGTTCAGGGA
3' ss Score
5.28
Exon sequences
Seq C1 exon
ACCCAAAGCCTCATAGAACCTACAAATACTTGGCTCCCTGGATTG
Seq A exon
GTAAGTACATTTAAATACAACTGCAGACCACCCACCATTTAGGTTAAACAAGAGCAGTCTCTCTGCGTAAATGGAGAACAACAGGTGCCAGGCACCCTCATCTCTGAATCAAACCTCATTTCTCTTCTGCTAATAAAACCCTCAGCCTTTATAATGGTGCTGTAGCCCTCCTTTTACCTAAGCTTCTTCTTCATAATTTCTCAGTCTTTACTAATGTTCCCAGTCTAACTTTTCGATAAGTCCTTTGATCACCTGTCCACCTACTCTTTTTCAACCTCGATTTCACTGCTCTCGTAATCACATCCTATGGACAGACATACTGTAAATTCACATCCCTGAAATGTACTGGCTTTTCCCACCCCTGCCCATGATGAGCCTTCTCCTGACACCCTTGGTTCCTCCCAAGTTGGCCCCACTCTCCCCAATGCCCATACACACCCATCCATGGTTCAG
Seq C2 exon
GGACAGGTTTGCTGCTATTGGAGGGGCAGAAGTGGTTCCAGCACCGGCGGATGCTGACCCCAGCCTTCCGCTATGACATCCTGAAGGCCTACGTGGGAATCATGGCCGACTCTGTCCGAGTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013481:ENSBTAT00000017936:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
NA
C2:
PF0006717=p450=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]