HsaINT0044424 @ hg19
Intron Retention
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450, family 4, subfamily A, polypeptide 11 [Source:HGNC Symbol;Acc:2642]
Coordinates
chr1:47402336-47403018:-
Coord C1 exon
chr1:47402974-47403018
Coord A exon
chr1:47402464-47402973
Coord C2 exon
chr1:47402336-47402463
Length
510 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
CACATTCATGTCTCTCTTAGGGT
3' ss Score
9.02
Exon sequences
Seq C1 exon
ACCCGAAATCCCATGGTTCCTACAGATTCCTGGCTCCATGGATTG
Seq A exon
GTATGTGTGCAAACTAGGACTGCAGCCCACTCCCTAGTCAGGTTTGAGTTATTTATTTGGCTCACAGAGAACAACAGATTAGAGGCCACCACTATCATGACCTTATCCCCAAATCAAGCCTCACTTCCTTCTTCTAACAAGACCCTCACCCCTTCCTAATGCTGGTACAAACCTTCCTGAGGCTCAGCTTCTTCTATTTCATGTCTCAGTTCTCTCCAGACATCCTTGGCCTCACATTTATTTTACATCTGCCCACAACCCTTTTCAACTTTTATCTCACAGCTGTCATAATCACATGCATGTAGCAGCTCAATCAGAATATTCACATGCCTGAAATATACCTCCTTTTCCTGCATTTGCCCATGACGTGGCTTCTTCTGGATAGTTCTCCCCTTGAGAAGCCACCTTTCTCCCTCCCAAATTGTCACCAGTCATCCCTAGCTCCTTGCAGCCCCTGACACACACACACACACACACACACACACAAACACACATTCATGTCTCTCTTAG
Seq C2 exon
GGTACGGCTTGCTCCTGTTGAATGGGCAGACATGGTTCCAGCATCGACGGATGCTGACCCCAGCCTTCCACTATGACATCCTGAAGCCCTATGTGGGGCTCATGGCAGACTCTGTACGAGTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048-CYP4A11:NM_000778:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.2=100)
A:
NA
C2:
PF0006717=p450=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)