HsaINT0044424 @ hg38
Intron Retention
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450 family 4 subfamily A member 11 [Source:HGNC Symbol;Acc:HGNC:2642]
Coordinates
chr1:46936664-46937346:-
Coord C1 exon
chr1:46937302-46937346
Coord A exon
chr1:46936792-46937301
Coord C2 exon
chr1:46936664-46936791
Length
510 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
CACATTCATGTCTCTCTTAGGGT
3' ss Score
9.02
Exon sequences
Seq C1 exon
ACCCGAAATCCCATGGTTCCTACAGATTCCTGGCTCCATGGATTG
Seq A exon
GTATGTGTGCAAACTAGGACTGCAGCCCACTCCCTAGTCAGGTTTGAGTTATTTATTTGGCTCACAGAGAACAACAGATTAGAGGCCACCACTATCATGACCTTATCCCCAAATCAAGCCTCACTTCCTTCTTCTAACAAGACCCTCACCCCTTCCTAATGCTGGTACAAACCTTCCTGAGGCTCAGCTTCTTCTATTTCATGTCTCAGTTCTCTCCAGACATCCTTGGCCTCACATTTATTTTACATCTGCCCACAACCCTTTTCAACTTTTATCTCACAGCTGTCATAATCACATGCATGTAGCAGCTCAATCAGAATATTCACATGCCTGAAATATACCTCCTTTTCCTGCATTTGCCCATGACGTGGCTTCTTCTGGATAGTTCTCCCCTTGAGAAGCCACCTTTCTCCCTCCCAAATTGTCACCAGTCATCCCTAGCTCCTTGCAGCCCCTGACACACACACACACACACACACACACACAAACACACATTCATGTCTCTCTTAG
Seq C2 exon
GGTACGGCTTGCTCCTGTTGAATGGGCAGACATGGTTCCAGCATCGACGGATGCTGACCCCAGCCTTCCACTATGACATCCTGAAGCCCTATGTGGGGCTCATGGCAGACTCTGTACGAGTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048:ENST00000310638:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
NA
C2:
PF0006717=p450=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development