RnoINT0044508 @ rn6
Intron Retention
Gene
ENSRNOG00000009597 | Cyp4a1
Description
cytochrome P450, family 4, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:68945]
Coordinates
chr5:134495045-134495596:+
Coord C1 exon
chr5:134495045-134495089
Coord A exon
chr5:134495090-134495468
Coord C2 exon
chr5:134495469-134495596
Length
379 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGT
5' ss Score
9.22
3' ss Seq
CACACCTCTCTCCTGCCCAGGAT
3' ss Score
8.34
Exon sequences
Seq C1 exon
ATCCAAAGGCCAATGGCGTCTACAGATTGCTAGCTCCTTGGATCG
Seq A exon
GTATGTATGTCTAAGTTGGGAATGTGGTCTACTTCTAATTGGATTTTCCGAGTGCTGTGCCTCTGGTTCACAGAGAATAAATGTGACAGACTGCCACTATCATGGTCTACCCCCAAATCTCTACTTCTGACCCTTCACTTCTCCAAACAGTCCTATCTGAACATCAGTGTGATCTGCCTCCTTCTAACTCTTTCCGAGTTTTATCTCACAGCTCTCATAATCACAGCATGTATGCCAGTGCCGCTAGCTGGGAAATTCACGTTCTGGACTGTAGCATTCTTCAGAATTATCTCTAACACTTCATAGTTCCCTGTCCCCAATTTATTTAGTGGTCTCTCTGATTTGATCACACATATACACACACCTCTCTCCTGCCCAG
Seq C2 exon
GATATGGTTTGCTCTTGCTGAATGGACAACCGTGGTTCCAGCACCGGCGAATGCTAACCCCAGCCTTCCACTATGACATTCTGAAACCCTATGTAAAAAACATGGCTGACTCCATTCGACTGATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009597:ENSRNOT00000012888:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.3=100)
A:
NA
C2:
PF0006717=p450=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]