MmuINT0045328 @ mm9
Intron Retention
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115238276-115239212:+
Coord C1 exon
chr4:115238276-115238320
Coord A exon
chr4:115238321-115239084
Coord C2 exon
chr4:115239085-115239212
Length
764 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
CACACCTCTCTCTGTACCAGGGT
3' ss Score
8.87
Exon sequences
Seq C1 exon
ATCCAAAGGCTAATGGTGCGTACAGATTGCTAGCTCCTTGGATTG
Seq A exon
GTATGTATGTCTAAACCAGAAATGTGGTCTACATATAATTAGCTTTTCCGTGTTGTGTCTTTGGTTCACAGAGAATGAAATATGACAGACTACCACTGTCTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTCGAGACAGGGTTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCACTACCACTGTCATGGTCTACCCCCAATGCTCTACTCTGACCCTTCACTTCAGCAAACAGTCCTATATGAACATCAATTTGATCAACCTTCCTCTTTGGCAATTTTTATCTCACAGCTGTCATAATCACAGCATGTGACACTAGCTGGGAAATTGACGATCAGGACTGTACCATTCTTCAGAGTTGTCTCTAACAGTTCCACTATGTCGCTCCTTGCCCCCAATTTATCTAATGGTCTCTCTATTTGTTTTTTTGTTTCCTTGTTTGTTTTTGGTTTTGTTTTTATGGTTTTTTTAGGTATTTTTGGTTTTTCAAGACAGGGTTTGTCTGTAGAGCCCTGGCTGTCCTAGATCTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGACATGTGCCACCACTGCTAGGCTGGTCTCTCTTATTTGATCCCACGTAAACACACACCTCTCTCTGTACCAG
Seq C2 exon
GGTATGGTTTGCTCCTGTTAAACGGACAGTCATGGTTCCAGCACCGGAAGATGCTAACCCCAGCCTTCCACTATGACATTCTGAAAACCTATGTGAAAAACATGGCTGACTCCATTCGATTGATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-Cyp4a31:NM_201640:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.3=100)
A:
NA
C2:
PF0006717=p450=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: