MmuINT0045340 @ mm10
Intron Retention
Gene
ENSMUSG00000063929 | Cyp4a32
Description
cytochrome P450, family 4, subfamily a, polypeptide 32 [Source:MGI Symbol;Acc:MGI:3717148]
Coordinates
chr4:115602928-115609751:+
Coord C1 exon
chr4:115602928-115602972
Coord A exon
chr4:115602973-115609626
Coord C2 exon
chr4:115609627-115609751
Length
6654 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGT
5' ss Score
7.12
3' ss Seq
ATGTTTCTCTCCCACTGCAGGAC
3' ss Score
11.44
Exon sequences
Seq C1 exon
ATCCAAAGGCTAATGGTATCTACAGATTGCTAGCTCCTTGGATTG
Seq A exon
GTATGTATGTCTAAATTTGGAATGCGGTCTACTTCTAATTAGATTTTCCAAGTGTTGTGTCTCTGGTTCATGGAGAATGAAATGTGACAGACTACCACTGTCATGGTCTACCCCCAAAGATCTACTTCTGACCCTTTACTTCTCTAAACAGTCCTATGTGAACATCAGTTTGATCAACCTTCCTCTTTGGCAATTTTTATGCCACAGCTGTCATAATCACAGCATGTGACACTAGCTGGGAAATTCACCTTCTGGGCTGTACTGTTCTTCAGAGTTGTCTCTAACAGTTCCACTTCGTAGCTCCTTGACCCTCTTGCGCGAGCCCAACTCGCCAGCAAGAACGACGCTGCAACAGGATCCTTCTGCAAACGTTTATTCAGTCCTGTTTCTTCTTTCTCTATATATCTCCCTTGTTTTTATATCTCCCTTGTTTTTATATCTCCCTTGTTTTTATATCTCCCTTGTTTTTATATCTCCCTCGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCTTTTATACTCTCAGTTCCCATCCACGCACAGCAGGCCACGCCACCTCACCAGGCAAGCAGCTTCAGCTAATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATTCACCTGTATCCTGGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTATATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACAATTCCCCCTTTTTTCTTTTTTGGCAGAGAGAATGTCTGTAGATAGCCCCTCGCAACCATGCCCCTTACCTGTCTTTGGGAGACAAACAGCATTGGTTTGATCCCTGTCTTAGGTTGGTGACATGCCCAGGGAGTCTTATCACTGACTACCTCTCAATCATGCCAAGCCACTCCTGGGGAGATTGTGTTTTGCTTGCGGCAGGTGCATCAAAAGGCCAGGATGTTAATTAACCTATGGCCAGATCTTAATTGCTGCAAGCAAGCCTCATGGGTGAAGGTAGAGGTCTGATCCCCAGTGTGCAAGCATAGGGGCCCTACACAAAACCATCCCTTAGGCTCATCACCCAGAGAGGTCTTGGCCAGCTCCCGTGTCGTTTTTCCTGGGGGAAGGGAACTAGGACACTGAACCTTCATGCAATCAGACGTGCCTTCCACAGGATGCCAACAGCAAGCTATCCTCTGTGCAGTGCTTAGCCTCGCACCCCACGGCATAACGCAGCATAATTTCTTTTAGAGCGGCAAACCGAATCTGAGGAGATTGTCCTGCCTCCACTGCAGCAAAAGCCTACGCTACCATGGCGAAAGTGCGGGCCGCACACTCTGCACCTAACACATGTGCCAAACACAAAACACACACACACACTATAACAAGCATACATCCCAGGGCTCTCATCCCCGCTCATCTTCCCTGAAGCAAGGGATAGATGGCCAGCGGGGCTATCTCTTTAAGGGGAATTCAGGGATCAAAAAGCGTGGAAAAATTTGAATGTCATGTCGAGCTGGTATCGGCTTCTGGAACACTGAAAGGATCTCCCATCTTGGCTCCATCGTTTGTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGAGCCTCATTCTTGCAGCGTCTCACCAATCTCTCCAGCACCCAAAGAGGTTCCGTCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCACGTCAACACCTGATCCTGTCGATCCCCAGGGGAGATGGACACAATACCTCGTGGTAATGAGACCATAACCTCAATCACCTGTGTGTTCATCTGGGGAGTCAATATGAGAGTCAAGTTTTCACTAGCTTCCCCTCTGTTAGGCAATGATTTCCACGCCCTTATAGCAATCTGATTCACCTGCTCAAACACCTGCACTGGATATCCTGTCTGTTGTTGTGCAAATCTACCTTGATCAAGCAGCATATCTCTATCCCATGCAAATTCAGCTTGATCAGTGAAAATAGGACATCCCAGCAAAGAGAATCTATCCTCTTTCCAGACCTCCGGACAGAAGGTCTGCCCATAGATGGCTGACGAGGAGGCATAGGGAGGGGGAGCAAAAGCTAATTCGCCTTCCTCCTCTGCCTCAACTCTTTTATTTTGTCCTTTCTGTTCACCTGATAACACTGTGTCTCCTTTCTTTTTCCTTTTTCTTTTTAAGCCCTTTTCCTCTTCTGACATACTTTCTTGTTGCTCTATAAGGATTTTCTGACCTGTCTTGACTGCCTCTACACACAGTTTCAAACAGTAACAGAGTCCATATATCAGAACAAACAAGACCAAAACTATCAGACCTACCCACAAAGGGTCAATGGGAGAAAAAAGCATAACTACTCAGCGAGGATCTATTGATCACTACACCGAGGTTATCATAGTTCCTTAACTTGTCCCCAAACCGGGAACCTTAACTTGTCCCAAAACCAGGAACCTTAACTTGTCCCAAAGCCTGCTTCCTGGCAACTTTATATTCGCCTCTATTTTATCCGAGGTCCTTCCCAAACTCCTGGGGTCGCAAGTTTCACTCACCGTGAACTTACCCTGCCAGCAACCACTGACTGCTGAAAGTTCTGAACTCGGTGGGGGAGTCGGTTCCCCGTACGGGCCACCAATTGTCGTGCCTGCTCTCGACCAGCAAGAACGATGCGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTCTTCATCTTTCTTCTTTCTCTTCATCAGTACCGTTCCCCAGCTGAAGAGTTCTGAATCCACGCCGGATCCTTCTCAACAGTCTGTTTTACGGGAACACTTTATTAACCCCTTCTTCCCCGTTATGCAGTTCTGAATCCTCCCTGTAGCAGGGGGTCTTCGCTTGTGCCTGAAGATGTTTCTTGTCCCGGGTTTCGGCACCAATTCTTAATCGCGTTCTCACGCCCGGCCAGGAAGAACACAACAGACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAGGAGTGCAAAAACCCCAAACCCCAAAAACGAAAGCCCCCTTCTTACATCTTTAGGAGCCAGAGCTCCGGCGCGCCGGGGCGCAGAGCGCGCTCTATTGTTTACATCTTTAGGCAGCGAGCGAGCGCAGGGCGCGCAGAGCCAGAGAGATGCCAGCGAGAGAGAATGGCGGAAACCCCGTCCCCTTTTTTAGGAGCGTTATATTTCGCCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGCTGACGTTCATGGGAAAGGCAGAGTACAAGTAGTCGTAAAATACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCGCCATCTTGTGACGGCGAATGTGGGGACGGCTCCCAACATGACCCGAATTATCTAATTGTCTCTCTGATTTGTTTTTTGGTTTTTTTGTTTTTGGTTTTATGGATTTTTAGGTTTTTTTGGTTTTTCGGGACAGGGTTTCTCTGTAGAGCCCTGGGTATCCTAGAACTCACTCTGTAGACCAGGATCGCCCTGAAATCAGAAATCCACGTGCCTCTGCCTCCCAAGTGCTGGGATAAAGGCATGTGCCACCACTGCCCAACTGGTCTCTGGCTTGATCCCACATATACACACACCTCTCTCTGGCCCAGGGTATGGTTTGCTCTTGTTGAATGGACAGCCATGGTTCCAGCACCGGAGGATGCTAACCCCAGCCTTCCACTATGACATTCTGAAACCCTATGTGAAAAACATGGCTGACTCCATTCGATTGATGCTAGTGAGTTCATTTCACTTAATTCTCCTCTACTCCCCTCAGCTCTGCTGTCCTTTCTACATCAGCTGCTTCTTCTGCTACTACTACTGCCACAGGTGCCAGAGCTGCTGCTGCTTCTCCTCCTACTCCTCCTACTCTTCCTCCTTCTTTCTTTTCTTCTTACTGCTTAAATTCTCCTCTCTTTCTCTCTCAATCTCTCTCTTCACCTACTCAGTGTATACATCAACAAGCTTCAAATATGTATATATATTCTACTGTGAATACAGGTTATTCAAATATAGTTGGAACAGAAAATTTCCAGGTAATAGGATATGGTCATACTTGCTCATTGCCCAAGGCTAAGAGCATCAGGGTACTCTTCTGCCTCTTCAAATCTTGAACTTCAGAGAGAGTTCTCAGGATAATGCTTAGTTGGGGTTTCCCTTGGGTCTCAGTGCTTCTGCACATACTTGAGTGACTCATCAGGGAGATATACTCCAGATCCACATTGTCATAACCAAACCTACCATACCACAAACTTTTAACAGCACTCTGGATTATGATTGTTTTAGTTAATTGAAGCTAGCTTACAGTTCAAAAGTTTAGTCCATTACCATCATAGTAGAAAGCAAGATAGAACATAAGCATACATGATATGCTGGAGAGGTAGCTGAAATTCTACATCCTGTTCCAAAGGCAGCAGAAAGAGAGTGAGACATTAGGCGTGCCTTGAGCATCTGAGTTCTCAAAGCCTACCTCCAATGACCACTTCCTCCAACAAAACCACACATACTTTAACAAGGCCACACCTGCTAATGGACCTTTAATCCCCTGTAAAATCAAAATGAAAAGGCATATCACATACTCCTTACATGAATAGGATATATTTTACAATTCCAAACAGGAGAAAAGGGAACATGGTAAAGAAATACTGAACCAGAGGAAGACTGAAAACAAGTTGGCAAAATCCAATATCTGCTTTTCAATGTCTTATGTCAAAGTGATCTTGAAATCTCCAACTTCATTCAGTGTTGTTGGCTTGTTCAACTCCCTGATACCAGCCCTGCTCAGCAGATAGCCCACAGCTCTAACATCTCCAACATCTTGGGGTTCTAAGGCAGTTGAGGCTTCACCTTCACAGATTCACACAATAGCATCTTTAATTCTCTATATAAGGACACACACGACATATGCCTGGCCTCAGCAGCTTTCGTTAGTTGTAGAGGGAAATTCCATAATCCCTTGCTTCTTTCCTTGACTCTAAAGACAGAACCATGTGGCCATACTGCTAAGTTCTGATGCTTGCTAGGCCTGGACATGGACCCCTCATTAAATTACATTTTCACCAGCTGGTTTTGACGGTTTCTTTACTGCCTAAGCTTGGCTGTCCTAAAACTCAATCTGTATACCAGGCTGGTCTCAAACTTAGAGATTCATCAACCTCTGCATCCTGAATGTTTGGATCAAAGGTATGGACCTCCAGGCCTGGCCCTAGGCTTTTATTTAATTCTTTTCACCTTTCTTTAATGTCTTTTTACAAAATGGAAGTTTATCTGGCTGGGGTTCTGGTGTGAGGTTGCCACTTCTTTTTCCACTTAGCATGAAGCTTTCTTTAATCTGTTTATCCCCTTCAACACAGGCTTTAGCTACATTTCGACTTTCTGGTGCCTCCTTTCTCCTCAAAGTATATATTTTGTATTTTTTTTCTTGCTCAGTTTGCTCCTTTTCATTATAGATCTGCATAAGAGTGAATACTAATAACCATATGACAGAATTCATAGTAAGCTATTTTAAGATATCCTTTACCAATGCAATTAATCCAAAACTCTTCACTTTAGCCTTAGGCAGACTTTTTGAACAAGGGAAAAAAGTAGCCATATTCTTTGCCAAAATATTACAATAACAGTTCCAAGGCCCTATACTAAAATTCTTCTCCTCTAAAACCTCTTGAACCACGACCCCACAATTCAAATACTTCTTTTACTAGAATATGGCCCATTAAACCCCACTTAAATCATTCAACTGCTTTCAAATTTCCAAAGAAAATATTACTCCAAACAAAGCATGGTCAAGTCTATCATAGCAATACCCTACTTCTGGTACCAACTTCTGTCTTAATTTGGGTCACATTGCTGTGAAGAGATACCAGAAAACATTTAATTGGGGCCAGCTTACAGTCTAGAGTTTTAGTCCATTGTCATCATGGGAAGCATGGTGGCACACAGGCATACATGATGCCAGAGTGGTAGCTGAGAGTTCTACATCAGATCCAAAAGCAGCAGGAAAAGAGTGAAACACTGGGCATAACTTGAGCATCTGAGAACACAAAGCCTGCCCCCTAGAGACCACCTCCTCCAACAAGACCACACCTACTCCAACAAGTCCACACCTCCTAATAGTGCCACTCCCTTTGGTCCTATGGAGGCTATTTTCATTCAAACAACCACAATTAGTCAATTGTTATCAGCAAGCTTTTGAAGAATACATAGTAACTGGAGATGCTATCCTGGTTACTTGGGATTTTTATGCTCTATACATAGAAGTCCTACCATTATCTCAGGCTGAGTTGTGCTTTCCATACACTGATGTATCAGCTATTTATCCCCTAAAAACAGCTTTGTTTATCAGATAAAACATCTTAAATAATTGTAAACATGTGAAACTTGCTTCCTTTCTTATGAGTTTCTATATTTAATTTTGAAGAAATTTACAAAAATATAAGTGTCCTTTCACAAAGAGATGTTTTGCAATCTGTAAAATATCTGTTATCTAAGTTGAAGGACTTAGAACACAGTATCTTAAAATATAGGGAAAGAATTCAGTCAACTGAACACATGTCTTCTGGAGAAATTAAGTCAATGTTTCTCTCCCACTGCAG
Seq C2 exon
GACAAATGGGAAAGGCTGGCTGGTCAGGACTCCTCAATAGAGATTTTTCAACACATCTCCTTAATGACCCTAGACACTGTCATGAAGTGTGCCTTCAGCCACAAGGGCAGTGTTCAGGTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063929:ENSMUST00000129918:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(16.1=100)
A:
NA
C2:
PF0006717=p450=FE(9.0=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types