HsaINT0044425 @ hg19
Intron Retention
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450, family 4, subfamily A, polypeptide 11 [Source:HGNC Symbol;Acc:2642]
Coordinates
chr1:47401195-47402463:-
Coord C1 exon
chr1:47402336-47402463
Coord A exon
chr1:47401320-47402335
Coord C2 exon
chr1:47401195-47401319
Length
1016 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CATGCCCCCTCCCACCACAGGAC
3' ss Score
10.92
Exon sequences
Seq C1 exon
GGTACGGCTTGCTCCTGTTGAATGGGCAGACATGGTTCCAGCATCGACGGATGCTGACCCCAGCCTTCCACTATGACATCCTGAAGCCCTATGTGGGGCTCATGGCAGACTCTGTACGAGTGATGCTG
Seq A exon
GTGAGTCCATGTCTCTCTCCTCTCCCCACACCCACTCACAGCACACACTCTCACCAACTCCACTCTCAACCCTGTGTCCCACAGGCAGACATAGACATAGACACATGGAACAACACTCTCAGGTCATTGCTGTGAGAGTAGAGGGTTCCCCAGAGTTGTATAAGGTAGGAGAACACCCAGGCATCAGGTCATATCCACGCTTTGTTCCCCACCATAGGAATAGAGATTCATGGTGAATGCAAGGCCCTTCTCCTCCCACTTTGGAACCTTCAGCACAAGGGACTGGAGGAGTATGCAATCTTGCTGGACAGTAGGACTTCCTATGCTGGCTGGCCTGGGCAATGGCAGCTTCAGTGGCAGCATGGACAGGCCAAGATGTCACCCACCCAGGCTCTGGCCTGGGGCCCCGGGTTTCTGCATGGATTTAAGCCACCCTGGGAAGGAAATGAACACCAGGTCTATGTTCTCAGAGCAATACCTTCCATAGATAGCATCATCTCCAGTCAGGACTCTGATTTCTCACCCAACTGTGCCCAGCACATTTTGATGAATGGAAAAGAATTGAAGTCCCTGTTTTCTCTACAACAGAGTGCCCATTCCGGCCCCTCAAGCTATCTTTGGCACTGAAACTTTCCTACTAGTCCCTCAGAACTAGCTCAGCTCTCAGAACACTGAAGAGTCCCCCATTATTTATCCCAGAACAACAATAGCAATACAATTTTCACAACCATATGTCCTAACTGAATCTCAAAATTCAATACTTAATCCATGCTATTGTGAGAGGATCTGTTGAATGTTGTATTAAAAGTGTGTGAGAATTAGGCGTCAGTTTACCAACACTGGCTTTACAGTCTCAGTTTCTACAATGCATCTGCTCTGTAAAGTGAGGAATCCCAACCAAGATATCTGCATGCTACAGGAAAAAACAGGATATCTGCAGGTACATGAAAAAGCCAGGCCTTATTAGCAAAGCACTTCTTGGAGATTAAGAAGGTCCATGCCCCCTCCCACCACAG
Seq C2 exon
GACAAATGGGAAGAGCTCCTTGGCCAGGATTCCCCTCTGGAGGTCTTTCAGCACGTCTCCTTGATGACCCTGGACACCATCATGAAGTGTGCCTTCAGCCATCAGGGCAGCATCCAGGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048-CYP4A11:NM_000778:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGGCTTGCTCCTGTTGAA
R:
ACCTGGATGCTGCCCTGAT
Band lengths:
246-1262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)