RnoINT0044521 @ rn6
Intron Retention
Gene
ENSRNOG00000009741 | Cyp4a3
Description
cytochrome P450, family 4, subfamily a, polypeptide 3 [Source:RGD Symbol;Acc:631356]
Coordinates
chr5:134476330-134476601:-
Coord C1 exon
chr5:134476542-134476601
Coord A exon
chr5:134476458-134476541
Coord C2 exon
chr5:134476330-134476457
Length
84 bp
Sequences
Splice sites
5' ss Seq
TTATCCCAG
5' ss Score
-43.53
3' ss Seq
ATGATCAGTCTCTGGTACAGGTT
3' ss Score
4.54
Exon sequences
Seq C1 exon
GGATCTGCGGGTTTGGGACTCCCGCTAAATCTATTACTGAATTTTTATTTCCCCATTTTA
Seq A exon
TCCCAGTTAATGTAACCAAATGATCCCAGGGGTACCTTTGATTCCACCTCTGTCAGACACGTTAATGATCAGTCTCTGGTACAG
Seq C2 exon
GTTATGGTTTGCTCCTGTTGAATGGGAAGAAATGGTTCCAGCATTGGCGGATGTTGACTCCAGCCTTCCACTATGGCATCCTCAAACCCTATGTCAAAATCATGGCGGACTCTGTCAGTATAATGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009741:ENSRNOT00000012681:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(4.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCGGGTTTGGGACTC
R:
ACTGACAGAGTCCGCCATGAT
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]