MmuINT0045374 @ mm10
Intron Retention
Gene
ENSMUSG00000024292 | Cyp4f14
Description
cytochrome P450, family 4, subfamily f, polypeptide 14 [Source:MGI Symbol;Acc:MGI:1927669]
Coordinates
chr17:32911439-32911708:-
Coord C1 exon
chr17:32911655-32911708
Coord A exon
chr17:32911567-32911654
Coord C2 exon
chr17:32911439-32911566
Length
88 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TACTATGACTGCTATATCAGGGG
3' ss Score
1.98
Exon sequences
Seq C1 exon
CCGCTGTTGCACTCAAGGATGTGATATTCTACAGCATCCTAAAGCCTTGGCTGG
Seq A exon
GTGAGTGCCTGTAGGTGATGGGCGAGGGACACCCTTGGGGGTCAGGGAATGGTACTACTTTTGCCTTATACTATGACTGCTATATCAG
Seq C2 exon
GGGATGGGCTCTTGGTGAGTGCTGGTGACAAGTGGAGCCGCCATCGTCGCATGCTGACACCCGCTTTCCATTTCAACATCCTGAAGCCCTATGTGAAGATTTTCAACGATAGCACCAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024292:ENSMUST00000054174:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTTGCACTCAAGGATGT
R:
TGCATGATGTTGGTGCTATCGT
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types