MmuINT0045412 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:32657448-32659184:+
Coord C1 exon
chr17:32657448-32657575
Coord A exon
chr17:32657576-32659062
Coord C2 exon
chr17:32659063-32659184
Length
1487 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CTGCTCCCTTCTCTGGCCAGGCC
3' ss Score
9.71
Exon sequences
Seq C1 exon
GGGATGGACTGTTGGTGAGTGCTGGTGAGAAATGGAGCCGCCACCGCCACCTGCTGACACCTGCATTCCACTTTGACATCCTGAAGCCCTATATGAAAAATTTTAATAAGAGTGTGAACATCATGCAT
Seq A exon
GTAAGTTTGTGTGTATATGTGTTTGTATGAGATAATTTCTTTTTAACATTAAAATTATGTATGTAAATGTAAATTATATATAAAACATAGAAATATATATATATATTTGAGATAGGTTTTTTTTGAGACAGGGTTTCTCTGTGCAGAACTCATAGAGATTATTCTATGGAACTCATAGAGATCTTTCTGCCTCTGCCTTCTGAGTGCTAGGATTAAAGGCATTTGCCAACACTGCTTTATTTAGTCATACCACTTGGCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTGTTGTTGTATGTGTATTGGAGTTTTGCCTGAATATATGACTATGTGCTTATAGAATTCAGAAGAGGACATTGGATCTCCTGTAACTGGAGTTAAAGACAGTTGTGAGTCACTATGTAGGTAATGAGAATAAAGCCCGAGTCCTAACAAGTATTTTTACCTATGCCATGTCTACAGCCCCATATGGGGTGATTTCTGTAACCATATAGCAGTTAACATTTATTGAGTATCTACTATGAAACAGAAATATTATGCCAGTTCCATGATCTGTGTTGTTGTCTGTGGTAATTTTCACACTGCCGTGAGATAGAAATGGCTATGAAAGTTACCTTATGGATGATGAAACTCAGGGCCTTAGAAGGCAGGGAGCTCATCCAAGTTCAGGAGCCATAGGAGAGAGAGTGTGAGTGGTGGAGCAGCCATTGAACTATGGCTTATGGGGCGGCAGATGAGGTCAAATGATGTTACAAGATATTTGATCCCCACGACTGTGAGCCAGAAAAACCTTGTTGTGGTGTATCTCAGCCTTAGCACTCACTTTTTATCCAGGAGATCTCAGTTTATTGTAAACAAGTAGTTGTAGGGTGGCCCAACCTTAGCACACACCTTTAACCCAAGAGCTTTCTGTAGACAAGAGATAAATAAAGTCGAGGATAGGTCTATTGAACAGAACAAGGCAGAACCAGCAACCAGCTGACGGGGTGTGAACCTCAGGGAGTAGAAAGGAGGGACGTTGAGGAAAACGGTGTTCAAGACAATGTGGAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGCATGTAGGAACTTCAAATGGGTACTTTCTCTGCCTGTCTGAGCTAGCTAATAGTGTGTGGCTCCTGAATTTTCATTGGTAAAATTGAATGGCTGGGATTTTTGCTTTTAGAACAACAAAATGAATTGATGCTGAAAGTTTACCAAGTGGGAACTAGGAGAGGGAAATGCGCTGACCAAAAAGCATACAGAAGTTAGACTTGAACTCAAAGACTTGTGTCTTCCACCTAAGTCTGGCCTATTCTGGAAGGCCTGGGGCAGAGGCCCCAGTGGGGTTTGTATGTGTTTTTTGTGTGTGTGTGTGTGTTTGTGTGTCTATCCTGGTGTTTGGAGTTGACCGGGGCTCAGGAGCCAAGGCCTAGTTCTGCTCCCTTCTCTGGCCAG
Seq C2 exon
GCCAAGTGGCAGCGTCTGACCACCAAAGGAACTGCCTGTCTGGACATGTTGGAACACATCAGTCTGATGACCTTGGACAGCTTGCAGAACTGTGTGTTCAGCTTTGACAGCAACTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp4f17:NM_001101445:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGGACTGTTGGTGAGTG
R:
CTGTCAAAGCTGAACACACAGT
Band lengths:
238-1725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: