MmuINT0045423 @ mm10
Intron Retention
Gene
ENSMUSG00000003484 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:MGI Symbol;Acc:MGI:1919304]
Coordinates
chr8:72000875-72001141:-
Coord C1 exon
chr8:72001088-72001141
Coord A exon
chr8:72001003-72001087
Coord C2 exon
chr8:72000875-72001002
Length
85 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CTGCCATGCTGTTCCATCAGGGG
3' ss Score
7.58
Exon sequences
Seq C1 exon
CTTTAGTTGCCCCCAAGGACACAGTCTTCTACCGTTTCCTGAAGCCGTGGCTAG
Seq A exon
GTAAGTACCTACAGGTGAGGGGCTTGGAATGCCTTGGAGTGTATAGAAGACGCTGTTCTTGCCTACTGCCATGCTGTTCCATCAG
Seq C2 exon
GGGATGGCCTCTTGATGAGTACTGGTGACAAGTGGAGCCGCCACCGTCGCATGCTGACACCTGCCTTCCATTTCAACATCCTGAAGCCCTATGTGAAGGTTTTTAATGACAGCACCAACATCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003484:ENSMUST00000003574:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.9=100)
A:
NA
C2:
PF0006717=p450=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAAGGACACAGTCTTCT
R:
TGCATGATGTTGGTGCTGTCA
Band lengths:
172-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types