MmuINT0045450 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:32810876-32811256:+
Coord C1 exon
chr17:32810876-32810942
Coord A exon
chr17:32810943-32811126
Coord C2 exon
chr17:32811127-32811256
Length
184 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
TCTATCTGTCTGTCCCTCAGGCC
3' ss Score
10.6
Exon sequences
Seq C1 exon
GATGAAGATGGAAAGGAGCTGTCAGATGAGGACATCCGAGCTGAAGCTGACACCTTCATGTTTAGGG
Seq A exon
GTGAGGGCATCAGTGTGAGGCCAGAGAAGGGGATAGGACTCTCTCCACCTGGGGAATCTGGGCCTCTCCATTCCTTGTGTTCTATCTTTTCCCAATTCCTTCTTAAAATGTCACTGCTTGAGTGCTGTCCACACAGTGGTGCTGAAACAGCCCAGATTCCCGAGTCTATCTGTCTGTCCCTCAG
Seq C2 exon
GCCATGACACCACAGCCAGTGGGCTCTCCTGGATCCTGTACAACTTGGCGAGGCACCCTGAGCACCAGGAGCGCTGCCGGCAGGAGGTGCAGGAGCTGCTGAGGGATCGTGATCCCAAGGAGATCGAATG
VastDB Features
Vast-tools module Information
Secondary ID
-Cyp4f40:NM_001101588:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAGATGGAAAGGAGCTGTCA
R:
TCGATCTCCTTGGGATCACGA
Band lengths:
194-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: