MmuINT0046268 @ mm10
Intron Retention
Gene
ENSMUSG00000026870 | Cutal
Description
cutA divalent cation tolerance homolog-like [Source:MGI Symbol;Acc:MGI:1925246]
Coordinates
chr2:34885871-34887797:+
Coord C1 exon
chr2:34885871-34885930
Coord A exon
chr2:34885931-34887751
Coord C2 exon
chr2:34887752-34887797
Length
1821 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TTGTTCTCCCCTCTCTCTAGGTA
3' ss Score
12.97
Exon sequences
Seq C1 exon
GGCCATCCTGGATAAGAAGATGGCTTCGTCTGTGAACATCTTGCCGAAGACCTCTTCTCT
Seq A exon
GTGAGTTTTGCCAAGGCCAGTGGTGGGGAGTTGGGGGTGTTAAGGTTGATTGAGAGAGCAAGGAGCAAATGGTGACCTGTCAGAGAATATTTAATCTGCACCTCATAGCTGACTTACATTCAGTGATTTATCAGTTTATGTCACCCAAGGAAAGCAAAACAAAAACAAGAACAAAAAACGAACCCCCAAAACTGCATTTAGAGAAAGAAGGGAAATGTCATGGTGTCCAAATTCATTAATATGATTTATGGAATTAGATTCCCAGCACAGGAATTCTGGGGACACGCTCAAATTATAGAACTCTGCAGCTAGCCCTCCGAATTTGCATTCATGGCCTTTGCTCGGTTGCTCTGACACCGTATTGAGCATGGCTCTTTAACTTGGCTTTAATTTTGATCTCTAAGCTTCAGCCTAGTGTGTTGAATTAGTCTCTCTGAGTGAGGGTAAGGCCCAAATTTCTGAATCTTTCATATGTCTCTAAAGCAATAGCTCTCAACTATAGCTCTCCATCCCTTTGTAGGGGAGTTGCAAATCAGATATCCTGTATATCAGATAATATGATTCATAACAGTATCAAAATTACAGTTATAAAATGGCAATGAAATAATTTTATGAAGCCGGGCGTGGTGGTGCACGCCTTTAATTCCAGCACTTGAGAGGCAGAGGCAGGCGGATTTCTGAATTTGAGGCCAGCCTAGTCTACAGAGTGAGTCCCAGAACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAAAAAATTATGGTTGGGGGTCACCACAACATGAGGAGCTGTATTAAAGGGTCGTAGCATTAGGAAGGCTGAGAACCACTGCTCTAGAGGCTTATGCTCAGCTGTGGAATGCTTGCTTGCCTAACATGCAAGCCTTGGGGTTTGGTCTCCAGCATAACAAGAAAAGCAAGAGGAGAGAAGAAATGGAGGGAAGGGCTAATGGAGGGACGAAGAAGGGGAAGGAAAAAGGAGGGAAGGAGGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAGACCTTATGTGAAATCTTAGGTAGCTGTCTTCAAGAACTCTAGACATCTTTGTATGTCTGCCTTAGAGTTCCTATTGCTGTGATGAAGCACCATGACCAAGAAGCAAGTTAGAGAGGAAAGGGTTTATTTGACTTATGCTTCCATATCACTGTCAAAGGAAGTCAGGACAGGAACTCAAGCAGGGCAGGCACCTGGAGGCAGGAGCTGATGCAGAGGCCATGGAGGAGTGCTGCTTATTGACTTGCTTCCTATGGCTTGCTCAGCCTGCCTTCCTGTCCACCCTCCCCAGCTCCCCAAGGCAGGGTTTCTCTGTATAATAGTCCTGGCTGCCCTAGAACCCACTCTGTAGACCTTGCTGGCCTCAAACTCAGAGAGATTCACCTGCCTCTGCCTCCTGAGTGCCGGGATTAAAGGCATGTGCCACCACCATCTGGCTTCAGTCTGCCTTTGTATAGAACCCAGGGCCACCAGTCCAGGGGTGGTACCACCTATAATGGGCAGGGCCTTTCCCCACCAATCACTAATTAGGAAAATGCTTTATAATCTGGCCCACAGCCCATCTTATGGAGACATTTTCTCAATTGAGGCTTCCTCCTCTCTGATGACTCTAGCGTCATCAGAGACAAGTTGACATAAACCAGCCAGCCCAGTGGGTTGAGAAAGATTCTGAAGTCTCTACCCTTCAGTAGTTTACCTACTTGGTCCAGGCTGACAACTCGCCAGGCTCCTCTTGTGAGCACTGCAGTTTGATTTTGTTCTCCCCTCTCTCTAG
Seq C2 exon
GTACTTTTGGAAAGGAGAAATAGAAGAAGGCATTGAGGTCTCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026870:ENSMUST00000113068:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=FE(35.1=100)
A:
NA
C2:
PF0309110=CutA1=FE(26.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types