MmuINT0048252 @ mm9
Intron Retention
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57205478-57206365:-
Coord C1 exon
chr17:57206155-57206365
Coord A exon
chr17:57206065-57206154
Coord C2 exon
chr17:57205478-57206064
Length
90 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTCCATCCTGCTCTGCCCAGCCT
3' ss Score
4.86
Exon sequences
Seq C1 exon
GAGCCCCACCTTGAGCCCTGGGGACACTCAGAACCCCTGGGCAGAAGATACTCTAGATGGCAGCTTTCTGGGGTCTGGAGAAGAGCTGGATCTACTGAGTGAGATTCTAGACAGCCTGAACGTGGAAACCAAGAGTGGCGACCTGCAGAGGGCCAGCCAGAGCTTAGACTGCTGTCAGCGAGGGGCGGCGTCAGAGAGCTGCTCCAGCCTG
Seq A exon
GTGAGAACTTCCTCTCTGCTACCCCCTCCCCACCTGTCAGTGTCTTCCCCTTTCTGACATCAACCATACCTTCCATCCTGCTCTGCCCAG
Seq C2 exon
CCTGACATCCCAGTGGGGTTACCATGGCAACTGGAAGAAGACAAGAGATCCCAGGATCCTCAGCCTTGGTCCCTACCTGGTGACCTGTCACTTCTGCAAGACACCCCATTTTCAGAGGTTGTAAGCTACTCAAAGAACTCCTGTTCTCAGCCATTTCAGCAGAGCCCCCCAAGCCAAGGGGACCCCGGGCCCTCTCTCAGCAAGCTGGATCCTAGACCCTCACAAAGCCCCTGCCCCAAGCTCCTCAGAGTCCCCACTAGGCACAGTCCTCCAGAAAGCCCCCAGCTTCTTGTCTCCACAGAGCCCAACTCTGATGCTGTCCAAAGATTACAATCCATTTCGTCTCCCTCATGCTCTCATTCTGCAGAGAACCCCAGAAACCAGCCTCCCCAGGTCCTCCTGGGCCAGGCTTGTGTACAACCCCTCGAGGAGCTGGGAGCCCCCACTTATGTCTCTCATGTAAGCACGCAGCAAAGGCCACAGGACAAGCAACCTCGAGTTGCTGATCTGAAGAAGTGTTTCGAAAACTAAGATAAGGAGTGTGAGGGGTTCCCAACTCTCAATAAAGCTGAATTTCTTTTCCTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-Dennd1c:NM_153551:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.875
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAACGTGGAAACCAAGA
R:
GTAGGGACCAAGGCTGAGGAT
Band lengths:
174-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: