RnoINT0046452 @ rn6
Intron Retention
Gene
ENSRNOG00000046050 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr9:9981437-9981845:+
Coord C1 exon
chr9:9981437-9981644
Coord A exon
chr9:9981645-9981728
Coord C2 exon
chr9:9981729-9981845
Length
84 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
CTCTATCCTGCTGTGCCCAGCCT
3' ss Score
4.99
Exon sequences
Seq C1 exon
GAGCCCCACCTTGAACTCCAGGGACACTCAGAATCCCTGGGCAGAGGACACTCTAGACGGCAGCTTCCTGGGGTCTGGAGAGGAGCTGGATCTGCTGAGTGAGATCCTAGACAGTCTGAGTGTGGAAATCAAGAGTGGCGGCCAGCTGAGGGCCAGCCAGAGTCTGGACTGCTGTCAGCAAGGGGCCTCAGAGAGCTGTTCCAGCCTG
Seq A exon
GTGAGAACCTACTCCCCTCCCCCTCCACCCGTCAGCTTCTTCCCCATCTGACACCAACCATACCCTCTATCCTGCTGTGCCCAG
Seq C2 exon
CCTGACATCCCAGTAGGGTCACCATGGCAACTGGAAGAAGACAGAAGATCCCAGGATCCTCAGCTTCAGTCCCTGCCTGGTGACCTATCACCGCTGCAGGACACCCCATTTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046050:ENSRNOT00000075215:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGGAGAGGAGCTGGATC
R:
GTTGCCATGGTGACCCTACTG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]