MmuINT0050312 @ mm9
Intron Retention
Gene
ENSMUSG00000030409 | Dmpk
Description
dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]
Coordinates
chr7:19677288-19677603:+
Coord C1 exon
chr7:19677288-19677385
Coord A exon
chr7:19677386-19677556
Coord C2 exon
chr7:19677557-19677603
Length
171 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
CCTCTCTCTTCTCCTTCCAGCCA
3' ss Score
10.88
Exon sequences
Seq C1 exon
CCAACTACAGGAGGCCGAGGTCCGAAACCGAGACCTGGAGGCGCATGTTCGGCAGCTACAGGAACGGATGGAGATGCTGCAGGCCCCAGGAGCCGCAG
Seq A exon
GCGAGTCCCTCACCTGCTTCCAGCCAAGGGGGCACTGGGTGGAGATGGGGGGCATGTTGGGTGTGTGAACCCTCGGGGCAGGGGAGGAGTCCAGGCTGGGGCACCGCAGCCGCGCCACTGCCTTTCTCCTCCATCCTCCACACTCCATACACCTCTCTCTTCTCCTTCCAG
Seq C2 exon
CCATCACGGGGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030409-Dmpk:NM_001190490:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF104814=CENP-F_N=PD(19.6=55.9),PF041569=IncA=FE(26.4=100),PF0003816=Filament=PD(41.6=94.1),PF088265=DMPK_coil=PD(47.5=85.3),PF139491=ALIX_LYPXL_bnd=FE(34.7=100)
A:
NA
C2:
PF041569=IncA=PD(1.6=12.5),PF139491=ALIX_LYPXL_bnd=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACAGGAGGCCGAGGTC
R:
ATGGGAAGGTGGATCCGTGG
Band lengths:
143-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: