BtaINT0049890 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53761557-53761861:-
Coord C1 exon
chr18:53761764-53761861
Coord A exon
chr18:53761604-53761763
Coord C2 exon
chr18:53761557-53761603
Length
160 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
CCTCTCTCTTCTCCTTCCAGCTG
3' ss Score
12.38
Exon sequences
Seq C1 exon
TCAACTCCGCGAGGCCCAGGCTCGGAACCGCGACCTGGAGGCGCACGTCCGGCAGCTGCAGGAGAGGATGGAGTTGCTTCAGGCCGGGGGAGCCGCAG
Seq A exon
GCGAGTCCCTCACCCGCCCCCTTCCCTGAGGTGCCCGGGGGAGGTGGGCCCTCGGCAGGTGTACACACCTGGGGGAGGGCGAGGGGCCAGGCTGGGGCACGCCGCGCCACCGCCCTCGTCGTCCCTCCACGCGCCCTACGCCTCTCTCTTCTCCTTCCAG
Seq C2 exon
CTGTCACGGGGGTCCCCAGTCCCCGGGCTACGGATCCACCTTCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.735 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF139491=ALIX_LYPXL_bnd=FE(30.8=100),PF060097=Laminin_II=FE(39.3=100),PF032458=Phage_lysis=FE(37.1=100),PF088265=DMPK_coil=PD(47.5=85.3)
A:
NA
C2:
PF139491=ALIX_LYPXL_bnd=FE(14.0=100),PF060097=Laminin_II=PD(1.2=6.2),PF032458=Phage_lysis=PD(15.7=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCCAGGCTCGGAAC
R:
ATGGGAAGGTGGATCCGTAGC
Band lengths:
135-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development