RnoINT0048361 @ rn6
Intron Retention
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79997469-79997778:+
Coord C1 exon
chr1:79997469-79997566
Coord A exon
chr1:79997567-79997731
Coord C2 exon
chr1:79997732-79997778
Length
165 bp
Sequences
Splice sites
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
3' ss Seq
CCTCTCTCTTCTCCTTCCAGCTG
3' ss Score
12.38
Exon sequences
Seq C1 exon
CCAACTACAGGAGGCCGAGGTCCGGAACCGAGACCTGGAGGCGCATGTTCGGCAGCTACAGGAGCGGATGGAGATGCTGCAGGCCCCAGGAGCTGCAG
Seq A exon
GCGAGTCCCTCACGCACTCCCAGCCAGGAGGACGCCGGGTGGAGATGGGGCACGTTGGGTGTATGAACCCTGGGGCAGGGGAGGAGTCCAGGCTGGGACACCGCAGTCGCGCCACCGCCCTTCTTCGCCCTCCACGCTCCATACACCTCTCTCTTCTCCTTCCAG
Seq C2 exon
CTGTCACGGGGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085:ENSRNOT00000020428:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF104814=CENP-F_N=PD(23.8=55.9),PF088265=DMPK_coil=PD(47.5=85.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACAGGAGGCCGAGGTC
R:
ATGGGAAGGTGGATCCGTGG
Band lengths:
143-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]