RnoEX0028280 @ rn6
Exon Skipping
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79997469-79998170:+
Coord C1 exon
chr1:79997469-79997566
Coord A exon
chr1:79997732-79997778
Coord C2 exon
chr1:79998081-79998170
Length
47 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTCTCCTTCCAGCTG
3' ss Score
12.38
5' ss Seq
CATGTAAGA
5' ss Score
5.58
Exon sequences
Seq C1 exon
CCAACTACAGGAGGCCGAGGTCCGGAACCGAGACCTGGAGGCGCATGTTCGGCAGCTACAGGAGCGGATGGAGATGCTGCAGGCCCCAGGAGCTGCAG
Seq A exon
CTGTCACGGGGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCCAT
Seq C2 exon
CTAGATGGCCCCCCGGCCGTGGCTGTGGGCCAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACCTGCTGTTCCCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085-'20-33,'20-26,24-33
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=1.000 C2=0.533
Domain overlap (PFAM):
C1:
PF104814=CENP-F_N=PD(23.8=55.9),PF088265=DMPK_coil=PD(47.5=85.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTTCGGCAGCTACAGGAG
R:
GCAGGGAACAGCAGGTGAC
Band lengths:
141-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]