RnoEX0028281 @ rn6
Exon Skipping
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79997732-79999364:+
Coord C1 exon
chr1:79997732-79997778
Coord A exon
chr1:79998085-79998170
Coord C2 exon
chr1:79998491-79999364
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCTCTCTCCAGCTAGATG
3' ss Score
7.1
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CTGTCACGGGGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCCAT
Seq A exon
ATGGCCCCCCGGCCGTGGCTGTGGGCCAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACCTGCTGTTCCCTGCCAGG
Seq C2 exon
GTCCCTAGGCCTGGCCTATCCGAGGCGCATTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCGCCACACTGGGCTGCACTGGGTTGGTGGCCTATACCGGCCGTCTCACCCCAGTCTGGTGTTTCTCGGGAGCCACCTTCGCCCCCTGAACCCTAAGACTCCAAGCCATTTTTCATTTAGGCCTCCTAGGAAGGTCGAGTGACCAGAGAAAGACCCAGAGCCTCTCTGTGCCCATATTCACCCCCGACCCCCCACTGCTCTGCTCCACTCCACACTTCTGTGAGCCTGGGTCCCTATCCTGCTCCGCTCCTGTGATCCGGGCCCGCCCCCTGGCGGCTGGGGAGGGAGGAAGAGGGCTCGTGCCCAGCACCCCGGTTCCTGCAGAGCTACTGCTGACTACTACTGCAGCCCAGGCATTCGCCAACCATGCTTTTACTCAGCCCCGACGTGGATGGGCAAACTGGTCAGCTCATCCGATTTCACTTTTCACGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085-'24-35,'24-34,25-35
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.533 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGATCCACCTTCCCAT
R:
CTTAGGGTTCAGGGGGCGAAG
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]