MmuEX0014893 @ mm9

Exon Skipping

Gene

ENSMUSG00000030409 | Dmpk

Description

dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]

Coordinates

chr7:19677288-19679170:+

Coord C1 exon

chr7:19677288-19677385

Coord A exon

chr7:19677892-19677981

Coord C2 exon

chr7:19678299-19679170

Length

90 bp

Sequences

Splice sites

3' ss Seq

CCTGTCCCTTCTCTCTCCAGCTA

3' ss Score

12.23

5' ss Seq

AGGGTATGT

5' ss Score

8.34

Exon sequences

Seq C1 exon

CCAACTACAGGAGGCCGAGGTCCGAAACCGAGACCTGGAGGCGCATGTTCGGCAGCTACAGGAACGGATGGAGATGCTGCAGGCCCCAGGAGCCGCAG

Seq A exon

CTAGATGGCCCCCCGGCCGTGGCTGTGGGCCAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACCTGCTGCTCCCTGCCAGG

Seq C2 exon

ATCCCTAGGCCTGGCCTATCCGAGGCGCGTTGCCTGCTCCTGTTCGCCGCTGCTCTGGCTGCTGCCGCCACACTGGGCTGCACTGGGTTGGTGGCCTATACCGGCGGTCTCACCCCAGTCTGGTGTTTCCCGGGAGCCACCTTCGCCCCCTGAACCCTAAGACTCCAAGCCATCTTTCATTTAGGCCTCCTAGGAAGGTCGAGCGACCAGGGAGCGACCCAAAGCGTCTCTGTGCCCATCGCGCCCCCCCCCCCCCCCCACCGCTCCGCTCCACACTTCTGTGAGCCTGGGTCCCCACCCAGCTCCGCTCCTGTGATCCAGGCCTGCCACCTGGCGGCCGGGGAGGGAGGAACAGGGCTCGTGCCCAGCACCCCTGGTTCCTGCAGAGCTGGTAGCCACCGCTGCTGCAGCAGCTGGGCATTCGCCGACCTTGCTTTACTCAGCCCCGACGTGGATGGGCAAACTGCTCAGCTCATCCGATTTCACTTTTTCACTCTCCC

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000030409_MULTIEX1-2/2=C1-C2

Average complexity

C2*

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.897 A=0.492 C2=0.017

Domain overlap (PFAM):

C1:

PF104814=CENP-F_N=PD(19.6=55.9),PF041569=IncA=FE(26.4=100),PF0003816=Filament=PD(41.6=94.1),PF088265=DMPK_coil=PD(47.5=85.3),PF139491=ALIX_LYPXL_bnd=FE(34.7=100)

A:

NO

C2:

NO

Main Inclusion Isoform:

ENSMUSP00000032568