BtaEX0011496 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53760689-53761603:-
Coord C1 exon
chr18:53761557-53761603
Coord A exon
chr18:53761149-53761238
Coord C2 exon
chr18:53760689-53760811
Length
90 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCTTCTCTCTCCAGCTA
3' ss Score
12.23
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
CTGTCACGGGGGTCCCCAGTCCCCGGGCTACGGATCCACCTTCCCAT
Seq A exon
CTAGATGGCCCCCCGGCCGTGGCTCTGGGCCAATGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGCCACCTGCTGCTCCCTGCCAGG
Seq C2 exon
GTCCCTAGGCCTGACCTATCGGAGGCGCGTTCCTTGCTCCTGTTCGCCGCTGCTCTGGCTGTTGCCGCCGCCCTGGGCTGCATTGGGTTGGTGGCCTGCGCCGGCCATCTCACCGCAGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347-'18-21,'18-19,19-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.667 C2=0.025
Domain overlap (PFAM):
C1:
PF139491=ALIX_LYPXL_bnd=FE(14.0=100),PF060097=Laminin_II=PD(1.2=6.2),PF032458=Phage_lysis=PD(15.7=87.5)
A:
PF139491=ALIX_LYPXL_bnd=PD(6.5=23.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGGATCCACCTTCCCAT
R:
CAGACTGCGGTGAGATGGC
Band lengths:
143-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development