MmuALTA0005575-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000030409 | Dmpk
Description
dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]
Coordinates
chr7:19677557-19677981:+
Coord C1 exon
chr7:19677557-19677603
Coord A exon
chr7:19677892-19677895
Coord C2 exon
chr7:19677896-19677981
Length
4 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
CCTGTCCCTTCTCTCTCCAGCTA
3' ss Score
12.23
Exon sequences
Seq C1 exon
CCATCACGGGGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCCAT
Seq A exon
CTAG
Seq C2 exon
ATGGCCCCCCGGCCGTGGCTGTGGGCCAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACCTGCTGCTCCCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030409-25-31,25-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.533
Domain overlap (PFAM):
C1:
PF041569=IncA=PD(1.6=12.5),PF139491=ALIX_LYPXL_bnd=FE(15.8=100)
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGATCCACCTTCCCAT
R:
AGGGAGCAGCAGGTGACG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: