RnoALTA0012156-2/8 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79997732-79998170:+
Coord C1 exon
chr1:79997732-79997778
Coord A exon
chr1:79998081-79998084
Coord C2 exon
chr1:79998085-79998170
Length
4 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
CCTGTCCCTTCTCTCTCCAGCTA
3' ss Score
12.23
Exon sequences
Seq C1 exon
CTGTCACGGGGGTCCCCAGTCCCCGGGCCACGGATCCACCTTCCCAT
Seq A exon
CTAG
Seq C2 exon
ATGGCCCCCCGGCCGTGGCTGTGGGCCAGTGCCCGCTGGTGGGGCCAGGCCCCATGCACCGCCGTCACCTGCTGTTCCCTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085-24-34,24-33,24-32,24-31,24-30,24-29,24-28,24-27-2/8
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.533
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGATCCACCTTCCCAT
R:
GCAGGGAACAGCAGGTGAC
Band lengths:
102-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]