MmuINT0050654 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119365230-119365734:-
Coord C1 exon
chr12:119365483-119365734
Coord A exon
chr12:119365400-119365482
Coord C2 exon
chr12:119365230-119365399
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
TTTATTTCCTAATCTTACAGATT
3' ss Score
10.11
Exon sequences
Seq C1 exon
AACGATATGGATAACATGTTAGGCCTGGCGGAGGTCCGGCAGGAGATCATGAATAGAGTTGCTGATGTCATCAACAAAGTCTTAGAGTTCAGAAGTTCTCTGGAGACCTACTCTTACCTCTGGGTGGATGACCGGGTAGAGATTCTAAGGCAGTTTCTCCTGTACGGCCATGCTGTGCCATCTGAGGAAATGGATGCTCCTGCAAGTGAAGACATCCTGCAACCACCAACACTAGAACAATTCAAAGAACAG
Seq A exon
GCAAGGCAACCCCTTAGAATTTAGTTCTATTAACTGGCTTTCCATGCTGTTGCTATATAGCTGTTTATTTCCTAATCTTACAG
Seq C2 exon
ATTGACATTTACGAGGCTTTGTATATTCAGATGAGCAAGTTTGACGACTTCCGAGTATTTAACAGTTGGTTCAAGGTAGACATGAGACCTTTTAAGTTGAGCTTGCTCAACGTGATCAAGAAGTGGAGTTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATGACCGGGTAGAGAT
R:
CGGAAGTCGTCAAACTTGCTC
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: