BtaINT0050240 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30481554-30482062:+
Coord C1 exon
chr4:30481554-30481808
Coord A exon
chr4:30481809-30481892
Coord C2 exon
chr4:30481893-30482062
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
AATTTTTTTTCTAATTATAGATT
3' ss Score
7.16
Exon sequences
Seq C1 exon
AGTGATGTGGACAACATGCTGGGCCTGGCAGAAGGTAGGCAGGAGATCATGAGGAGAGTAGCAGACGTTATCAGCAAAGTCTTGGACTTCAGAAACACCCTGGACACGTATGCTTACCTCTGGGTAGAAGACCGAGCCGAGTTCATGAAGCACTTCCTTCTATATGGCCCTACTGTGTCGGCTGAGGAGATGGAGCCTCATGTGAATGAAGAGGTCCCTGAACAATCACCAACACTTGAGCAGTTCAAAGAACAG
Seq A exon
GCAAGGAAAACCCTAAGCAGTCAATCTAGTTTCTGGGTTTTGACTGAGTTGTTGCACAGTGACTAATTTTTTTTCTAATTATAG
Seq C2 exon
ATTGACATTTATGAGGCCCTGTATGTTCAGATGAGCAAGTTTGATGACTTCAGGGTGTTTGATAGTTGGTTCAAGGTGGACATGAAGCCTTTTAAAGTGAGCTTGCTGAACATCATCAGGAAATGGAGCTGGATGTTTCAGGAGCATCTTTTGAGATTTGTCATTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078:ENSBTAT00000061103:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTGTGTCGGCTGAGGAGA
R:
GCTTCATGTCCACCTTGAACCA
Band lengths:
174-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]