MmuINT1008724 @ mm10
Intron Retention
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118126757-118127261:-
Coord C1 exon
chr12:118127010-118127261
Coord A exon
chr12:118126927-118127009
Coord C2 exon
chr12:118126757-118126926
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
TTTATTTCCTAATCTTACAGATT
3' ss Score
10.11
Exon sequences
Seq C1 exon
AACGATATGGATAACATGTTAGGCCTGGCGGAGGTCCGGCAGGAGATCATGAATAGAGTTGCTGATGTCATCAACAAAGTCTTAGAGTTCAGAAGTTCTCTGGAGACCTACTCTTACCTCTGGGTGGATGACCGGGTAGAGATTCTAAGGCAGTTTCTCCTGTACGGCCATGCTGTGCCATCTGAGGAAATGGATGCTCCTGCAAGTGAAGACATCCTGCAACCACCAACACTAGAACAATTCAAAGAACAG
Seq A exon
GCAAGGCAACCCCTTAGAATTTAGTTCTATTAACTGGCTTTCCATGCTGTTGCTATATAGCTGTTTATTTCCTAATCTTACAG
Seq C2 exon
ATTGACATTTACGAGGCTTTGTATATTCAGATGAGCAAGTTTGACGACTTCCGAGTATTTAACAGTTGGTTCAAGGTAGACATGAGACCTTTTAAGTTGAGCTTGCTCAACGTGATCAAGAAGTGGAGTTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581:ENSMUST00000084806:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATGACCGGGTAGAGAT
R:
CGGAAGTCGTCAAACTTGCTC
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types