RnoINT0048644 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:146041017-146041521:-
Coord C1 exon
chr6:146041270-146041521
Coord A exon
chr6:146041187-146041269
Coord C2 exon
chr6:146041017-146041186
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
TTTATTTCCTAATCTTACAGATC
3' ss Score
10.67
Exon sequences
Seq C1 exon
AATGATATGGATAACATGTTAGGCCTGGCAGAGGTCCGGCAGGAGATAATGAATAGAGTTGCTGATGTCATCGACAAAGTTTTGGAGTTCAGAAGTTCTCTGGAGACCTACTCTTACCTGTGGGTAGATGACCGAGTAGAGATTCTGAGGCAGTTCCTCCTGTATGGCCATGCTGTACCATCTGAGGAAATCGATGCTCCTGCAGGCGAGGACATCCTGCAGTCACCAACACTAGAACAGTTCAAAGAACAG
Seq A exon
GCAAGGCAACGCCTTAGCATTTAGTTCTGTTCACTGGCCTTCTGTGCTGTTGCTGTATAGTTATTTATTTCCTAATCTTACAG
Seq C2 exon
ATCGACATTTATGAAGCTTTGTATGTTCAGATGAGCAAGTTTGATGACTTCCGAGTGTTTAACAGTTGGTTCAAGATAGACATGAGACCTTTCAAGTTGAGCATGCTCAACGTGATCAAGAAGTGGAGCTGGATGTTTCAAGAGCATCTGCTAAGATTTGTCGTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCTGCAGTCACCAACAC
R:
CCAGCTCCACTTCTTGATCACG
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]