MmuINT0050686 @ mm9
Intron Retention
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119258661-119262456:-
Coord C1 exon
chr12:119262283-119262456
Coord A exon
chr12:119258866-119262282
Coord C2 exon
chr12:119258661-119258865
Length
3417 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TGATTTTTTTTCTCTCCCAGACA
3' ss Score
10.29
Exon sequences
Seq C1 exon
CTTTCTGATTATCAAGCCGACTTCAGTAGATGGTGGCATAAGGAAATGAAAGCAGTGAAGTTTCCATCCCAGGGAACCATCTTTGATTATTATCTGGACCACAAAACTAAAAAATTTTTGCCTTGGACTGACAAGGTTCCCCAGTTCTCCATGGATGCTGATGCGCCCCTGAAG
Seq A exon
GTAGGTGTGTGGAGCAGCAGGAGCCCAGCTCCAGAGTGCCTGTGAGGCTTGGGAGGAAAACAGCCCAGTTCTTCTATTTTGCCAGAGGCACGGGTCTTTGTGGTCTAGGCTCTGGAAATTATACTTTTTCCTGGGAGAGAAGAGTCAGCTGTAGGGATGCTTAGAGAGGAGGTTAATATTTCTGCAGACTTTTTGCCCTTTAGTTCAGCATAATCCCATGGGAACCACTTTCTTATAATTTCCTAGAAGCCATACAAGCTTTGTAAAACCAGAGCAGAGTTTAATTAACTCAATGATATGATTCTTATTTCCTTGCCTATATAAAGTTATAATATAACTATATATATGAATATATATAATGATATATATGACTATATAGTTTTTATATGTGTATGTGTGTGTATATATATATATATATATATATATATATATATATAAAATGTGTGTGTATGTGTGTGTGAGTGTGTGTGTGTGTATGTGTGCGTGTGTATAGTCACTTTTCACATAGAACTTCCTTCATTTACCACAAAGGGATGTGTTTGATCTTTCCAGTGCCAGTGTTCCACATTTTCCCTGCAGCTAACGATTCTACACTAATCTTTCTTCGTTGTTTCTCATTCTACATGGCCCATCCCCATCTCTCTGAGATTAGATTTGTGTGTGTGTGTGTGTGTGTGTGTGACCAATTTCTCATTCCTCCTTAATATCATTCTTTTTAATATATTTCTCATTTCGAATCACTTTAGAGCTGGCAGGAAGGGAGAGTTGGGCAGAACGTGCGGTGTTAGGACGCTCACTACCATCTCTGCTGCATGTCTTGTCCAGCCTACCTCAAACTTAGCTGCTCAGCAGTATTTTCTAGCTGGCAGAAACTGACAACCCACCAAACAATCCTGAAAACAAAAACTGCTATGAAAGCTTGGTGCAACTTATCAATCATATTCAAAAGAGGACAAGAAAAATCAATTTTAGTCAACAGATTTTATTGAACCGAAAAATCAATTTTCTTCTTGGGAAGTTTTATACTTACTTTACATACAATGGCACCGAGTGTGGCTGTCTACCAGCAGCCTCTTTTTATGTTGGAGCAGGACCAGGGGAAATCGAGATCTTTTCTGAATAATTTAGATCTAGGAACTAATTTATTCCTGTGTGTGTTTGTGTGTGTACATGTGTCTATGTGTTCATGTTGTGTGACTGTGTGATGTGGGTATGTGTGCCTATGTGTGACTACACTTGCACCTGGACATGTGAGCATTCAGAAATTGACACAGAATCTGCCTCAATCACTTCTCCATCTTTTAAAAATTTTTAATTGAAACTATAGCTCACCATTGGCAAGACAACCTGGCAGGGAAGCCCCAGGGCTGATTTCCCAGTGCTGGGATTTAAGGCACTATGGTGCCTGGATTTTTATGTGGGTACTACTGACCCAAACCCAGATCTTCATGCTTACATGGCCCACATTTAGCTAGCAAAGCCATCTCCCTATCTGCAGTTAACTAGCATTCTTTACAGGAACCTAGTCATTAGGCCCCATTTAATATGTGGAGAAACAGAACTGGAAAATGTTTGTACAGTGATTTTGGTAGTGAGTGTAAGATGACCAGTGATTCTCATTTGTCTGGGATTGAAAGCATTTCCTGAATGTTAAAGTGTTAACTTTTTTAAGCTGGGAGAGTTGGTCAGCTGGTACAAGCACAGTGACCTATCAGTCTGACTTCAAGTCCATGCTCTGAAGAGCTGTTTGTGTTAGGAGCATATTCTACGCTCAGTCTCCACAGGGTGGATTTGAATGAAGTCTCTGTACTCAGTTGCTAGCTGTGACACCTCCCAAGTTTTTCCTCTGAGGAGGAAAAAGCAACCGACACATCTCACGGGCTGGCTATGGATGTCCGGGTTGTATGACGTGTGTACGTGCTAAATGCAGGCCACCTGGCTCTGTAAGTGTTCACTCCTGGTATTCATATATGAAGAAAAGAGCTGACAGACAAAGAAAAATCTGGCGATGGCAACCGTGGATGAGAAAGGAAAGCAGTATCTTGCATGTTTAGAAGTCTAGTGTTATTTAATAGCACAGAACACAATATGGTCTTCAGGAGGCGCTAGGTGTCACTGTTAAAAAGGAAGTTGGGGGATAAATGGTCATCGCAAGACAATGGCCTGGAATGACCCACTGAATACTCCATTTGGATGAGTATTTGGATCAGCACTAACCCAAGCAAGGAGGAACTGTATCCGTTATGATTATATGTGTTTTTTTATGTCAAAAATCAACCCTGTAAGTAGGGTTGTGTGTGTGTGTGTGTGTGTTTGTGCATGTGCTTGTGTCTGTATGTATGTGTCTGGGCATGTATCCATGTGTCTGTGTGTATGTTTATTTGTATTATGTTTACCACTTTTACATATGACCACCAAGAAATGCACCAAAATAGCAGCTATATTTCAATTGTGCAGAATTCAGTCTCTATGTCTCTCTTTTGTCTGAATATTTTATTTTGTTCTATATTTTCTGAGCCTGTTTTTCCTGCCCCCCTCTCCTCTCTCTCCTCTCTTCCTCCTCCTCCTTCTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGCACAATGCATGTGACTTTGTGGAATCATCTCTCTGCCTTTGACTGTTGAAGACTGACCCCAGGTTGCCAGGCTGGCACAGTCGGTACCTTTTTCTGCTAAGCCATTTTGCCAGCAAGTCTGAGCCTAATTTTTCACTCATTTTATTTTATTCTCATAGATGATCTTTAAATACCTGTGGGAAATAATGGTACAGTAATAAATAAATATTAATAAACTGCCAAATTTTAGAGTATAAGAATGGAAGTTTAATTTCTTAACATTGCAGTATGTGACAGTTTCAGTTACACTTGGATCTGTAAATACTCTACTGGGGTCTCCTTGCACTGAACCCTTGTGCATGGACTGTGCCATTTGGGCCAAAATACTGTTCCACATTTAGTTCACTTCTTACTGTCTGGTCAGCTTCCAAAGAGGGCCTGATACTGTGTATCAAGTCCACTGTATTCTCTCTGAGACCTCAGACTGCTGGGGGAAGGAAGGGGCTCTGGGAAACAGAAACAGACCAGAGAGTAAGACTTCACCTTGAAACTATGTATCAGTTGCCTTTGCTACAGCCCTTGATGTCACCACCCAGCTGCCCTCCCGGAAGCTGTGATGTCTTTACCACTCAATCTTTTCTGCCGGACTTGAACTTGTACAGAGAGCTCCTTGGGTCTTAATTAAACATTGACTGTTGAGTCAGCTCTGAAGCTTTGTAATGCCTAGCCTTTCTCTGACTTTTCTCCTGATTTTTTTTCTCTCCCAG
Seq C2 exon
ACAGTTCTGGTACACACACCAGAGACAACTCGTCTGAGGTATTTTACTGAGTTGCTACTTTGCAAAGGCAAACCGATAATGCTGGTTGGAAATGCAGGAGTGGGGAAAACGGTCTTTTTGAGCAACACCCTGGCAAGTCTCTCTGAGAACTACATAGTATCCTGTGTGCCTTTCAACTACTACACAACATCAGCAGCCCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-Dnahc11:NM_010060:45
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: