GgaINT0127368 @ galGal4
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1087504-1088557:+
Coord C1 exon
chr18:1087504-1087677
Coord A exon
chr18:1087678-1088349
Coord C2 exon
chr18:1088350-1088557
Length
672 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CGTTCCCCCCCTGCCCTCAGGCA
3' ss Score
10.72
Exon sequences
Seq C1 exon
CTTGTGGACTACAGAGTGGAGTTCAGCAAGTGGTGGGTGGCGGAATTCAAGACCATCAAGTTTCCCTCCCAGGGAACCGTCTTTGACTTTTACATCGATCCAGAAACAAAGAAGTTTGAGCCTTGGTCTAAACTGATCCCCCAGTTTGAATTTGATCCAGAAGTGCCATTACAG
Seq A exon
GTTTGTGAGCCTTGTGTAGATTGGTCGTGCATTTGGTGACTGTAAGCACCCGTTGGGATGATGCATAATTAAACATCAAGCACTTCTCAATAAGAATGCCCTCCTGCATGGGGTACAAATAAATCACCTGGTTTTCATTACGGTGCTTGGACTGTGCAGATCACCTTCTGTTGGCCTTTCACATACAACCAGTGTGCAGAGTGCTGGGTTTGGTGGCAGCTCACCGACAGCAGAGAGACGGTGTTGGGACAGAGCCCCCGAGACAGCACGTTGTTGTGCTGCATCTGTCTCAAAACAGAGATGTTTTTATGAGCTAGGCAAAAAATGTCTGCAGGTAGAGAGCTGCATTTGCCAGCTGCGCTTCCCTTTCCTTTTGGAAGTGCTGCTGTGAGCAGATGACTTGAAAAAGTCGTTACCGTTTTAGCACAATGTGTGTTTGTGGGGAGATCCAGATGCTGCTGCCAGCATCCAGCTGTCAGGGTTTCATCTGCATAGACAGTTTAATTTTAATGGCTGGCAGCTGTGTATCATTCCCCTTCCAGGTGTGGTCTACAAACTGGACTCTCCTCATCCATTCCCTCCTCTCCCAGTTTTTCTGCTCCCCGGAGCGTGGCTGTGGGGTTGTGGCAGTGATGGGAAATGCTCACCCTCTCGTTCCCCCCCTGCCCTCAG
Seq C2 exon
GCATGCCTGGTGCCCACGGCCGAGACGGTCCGGCTGCGGTACTTCATGGATCGGCTCCTGGAGCGCCAGCGCCCCGTGATGCTGGTGGGCAGTGCGGGCACTGGGAAGTCTGTGCTGGTGGGGGACAAACTCTCCTTGCTGGACACGGACGCATACGTGGTGAAGAAGGTCCCGTTCAACTACTACACCACCTCTGCCATGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000001676:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCGGAATTCAAGACCAT
R:
AGCATGGCAGAGGTGGTGTAG
Band lengths:
342-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]