BtaINT0050814 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31112645-31113768:+
Coord C1 exon
chr19:31112645-31112818
Coord A exon
chr19:31112819-31113560
Coord C2 exon
chr19:31113561-31113768
Length
742 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTGTCTCCCCCGACCCCAGGCC
3' ss Score
9
Exon sequences
Seq C1 exon
CTCGTGGACCACCGGGCAGAGTTCAGCAAATGGTGGCTCAGTGAGTTCAAGACCATCAAGTTTCCCTCCCAAGGAACCATCTTTGACTATTACATAGACCCAGAGACCAAGAAATTCGAGCCTTGGTCCAGGCTCATCCCGCAGTTTGAATTTGACCCTGAGACACCTCTGCAG
Seq A exon
GTGAGTGTGGCTGAGTGACAACCAGGGATATGTAATGTCCCCAGAATCTGCGGTGGCTCTCGTGGCGCCCCTAACGGATTCCCAAAAGGTTTGACCTCATTAAGAATTAGCTCCTTTTCTTTTCAGAGGAAATTAGAGGTTCAGTATAGTGATGCATGTGTGCATGCTGAGTTACTTCAGTCCGACTCTTTGCGACCCTATGGACTATAGCCTGCTAGACTCCTCTGACTATGGGATTGTCCAGGCAAGCATACTGGAGTGGGTTGCCATGCCCTTCTCCAGGGGATCTTCCTGACCCAGGGATCGAACCTGTATCTCTTATGTCTCCTTCATTGCAGGCAGGTTCTTTACTGCTGAACCACCTGGGAAGCCCTCAGCATAGTCACAAGATCTCCCCAAGCCTAGCTATCTTAATTAGCAGGCCCCCCTGCAGGCATGCTGAGACAAGGCAAGTCGGGGTTGACCAGGCAGAAGGCTTTAAAATGCAATCCAGAGGCCGCAGGGAGGCAAACATCGCTAATAGAGGGGGATGGGCGTGCACTCTAACCACAGCATGAGTTACCAGGAGGGTCTCTGTGGGTAACGGGGGCCCTCCTGCCTGCAGTAGTGAGCCCCCCAACCCCAGCTCGATTCCCTCTCCTGAAATGCCCCAGGGTGCTCTGACAGCATGTGAGTCTCCCACTAGCCCGCAGTTCGCTCCTCCTGTCTCCCGCCACACCCGCCCTGTCTCCCCCGACCCCAG
Seq C2 exon
GCCTGCCTGGTGCACACCACTGAGACCATATGCCTCTGCTACTTCCTGGAGCGGCTCCTGGCGCGGCGGCGGCCTGTCATGCTGGTGGGAACTGCGGGCACTGGCAAGTCGGTGCTGGTGGGGGCGAAGCTGGCCAGCCTGGACCCTGAGGCGTACCTGGTGAAAAACGTGCCCTTCAACTACTACACCACATCAGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAATGGTGGCTCAGTGAG
R:
GCATGGCTGATGTGGTGTAGT
Band lengths:
352-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development