HsaINT0050073 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11671770-11672646:+
Coord C1 exon
chr17:11671770-11671943
Coord A exon
chr17:11671944-11672438
Coord C2 exon
chr17:11672439-11672646
Length
495 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTATTGTGCTCCCATTCCAGGCG
3' ss Score
9.65
Exon sequences
Seq C1 exon
CTTGTGGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTCAAAACAGTCAAGTTTCCTTCCCAAGGAACCATCTTTGACTATTACATCGACCCAGAGACCAAGAAATTCGAGCCTTGGTCCAAGCTCGTCCCCCAGTTCGAATTTGACCCCGAGATGCCCTTGCAG
Seq A exon
GTGAGTGCAGCTGAGCAGCCGAGGACGTGCGTGCAGTTGCCCTCAAGGATCTGCAGTGGCTCCAGTAGCAGCCCCGCATGGCTATCTGAGCATTTGTCCTTGCTAGGAACTAGTCATCCCCAGCTCCATGACTTTGCAGAGGAGATGATGGGTGTAATGAAGTCACAGATTCTACTAAAGGCCAGGACATTTCCTCAAGAGAGGAGGAAATGGCAGGGGCAGAAGATTTTAAAATGCATTAGAGAGGCCACAGAGAAAGAGGCCCGGGTGGTAGAGGAGAGCGGGGAAGCTCTCTGCCTAACTGCGGGGAGCCCAGAGAGTGAGTCTGTAGAATGGTCCCACTGTGAACATCAGGGAAGATACTCCTGACCGGTGCTTATTTGGGGAGCTCCATCGTGACGGAATCCCCTGTTCTGAAATGCTTCGGAACGCCGCTGGTGCATCTGTTTCTCCCTAGAGCCCACCCTTGGCAGGCTTATTGTGCTCCCATTCCAG
Seq C2 exon
GCGTGTTTGGTGCACACGAGTGAGACCATCCGTGTGTGCTACTTCATGGAGCGGTTGATGGCGCGGCAGCGGCCTGTCATGCTGGTGGGCACGGCTGGCACTGGCAAGTCGGTGCTGGTGGGAGCTAAGCTGGCCAGCCTTGACCCCGAGGCATACCTGGTGAAAAACGTGCCATTCAACTACTACACCACGTCAGCAATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAATGGTGGCTGACTGAG
R:
AGCATTGCTGACGTGGTGTAG
Band lengths:
353-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)