RnoINT0049263 @ rn6
Intron Retention
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52530831-52531656:-
Coord C1 exon
chr10:52531483-52531656
Coord A exon
chr10:52531039-52531482
Coord C2 exon
chr10:52530831-52531038
Length
444 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CCTATTACATTCTGTTCCAGGCT
3' ss Score
8.13
Exon sequences
Seq C1 exon
CTTGTAGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTCAAAACGGTCAAATTTCCTTCCCAAGGAACTGTCTTTGACTACTACATAGACCAAGAGACCAAGAAATTTGAGCCTTGGGGCAAGCTCATCCCCCAGTTTGAATTTGACCCTGAGATGCCTTTGCAA
Seq A exon
GTAAGTGGGACTGACCACCCAATGACATGGTACCCATGAGAGTGATCAGCAGCAACCCCTATTTGTATTGAGTGCTTGACTTTGTATAAACCAGTTGGTCCCCAGCTGTATTCATTTTCAAATCATAGGTGTAATGAAGCCATAAGTCCCCTACAGGAAAGGAAGCAAATAGAGAAGTCAGTCAGCATCATTGGGGACAAAGGACAGGAGATGGCAAAGCCAGATGATACTGTAGTCCCTTTGGAGATGCCTTAGAGAGACAGAGGACAGTCTCTACTGAACTCCAGGGTACAATAACAATGGGTTTACAAGATGGACAAAAGTAGAAGTTAAGAAAGATACTCCTACCTCCCCTTACTAGGCAAACTTTCTTATGACAGTCCCCTGTTCTGGAATGTCCTGGAACATAGTGTTGTGTGACATGCCTATTACATTCTGTTCCAG
Seq C2 exon
GCTTGTTTGGTACACACAAGTGAGACCATCCGTGTGTGCTACTTCATGGAGCGGCTCATGGAACGGCGGCGGCCGGTTATGCTGGTCGGCTCTGCAGGCTCAGGCAAGTCTGTGCTGGTGGGAGCAAAGCTGTCCAGCCTTAACCCTGAGGAATACATGGTGAAAAATGTGCCCTTCAACTACTATACTACATCAGCAATGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171:ENSRNOT00000005583:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
NA
C2:
PF127752=AAA_7=FE(25.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTACCGGGCAGAGTTCAG
R:
AGGGCACATTTTTCACCATGT
Band lengths:
344-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]